RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 SLC39A4Q6P5W5 647 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 GADL1Q6ZQY3 521 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 H2AFVQ71UI9 128 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 UBXN6Q9BZV1 441 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 SPATC1LQ9H0A9 340 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 TMEM117Q9H0C3 514 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 ELP3Q9H9T3 547 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 USP20Q9Y2K6 914 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 FOXN3O00409 490 aaPredicted RBP21.84■■□□□ 1.09
USP39-204ENST00000409766 LRRN2O75325 713 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 ATP4AP20648 1035 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 KIF22Q14807 665 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 ARHGAP44Q17R89 818 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 GLYCTKQ8IVS8 523 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 U2AF1L4Q8WU68 220 aaKnown RBP21.84■■□□□ 1.09
USP39-204ENST00000409766 FBXL18Q96ME1 805 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 RNF14Q9UBS8 474 aa21.84■■□□□ 1.09
USP39-204ENST00000409766 A0A0A6YYK5 440 aaPredicted RBP21.83■■□□□ 1.09
USP39-204ENST00000409766 EDNRBP24530 442 aa21.83■■□□□ 1.09
USP39-204ENST00000409766 MCM3P25205 808 aa21.83■■□□□ 1.09
USP39-204ENST00000409766 MXI1P50539 228 aa21.83■■□□□ 1.09
USP39-204ENST00000409766 IFI16Q16666 785 aaKnown RBP21.83■■□□□ 1.09
USP39-204ENST00000409766 CCDC181Q5TID7 509 aa21.83■■□□□ 1.09
USP39-204ENST00000409766 SEPT14Q6ZU15 432 aa21.83■■□□□ 1.09
USP39-204ENST00000409766 ARHGEF19Q8IW93 802 aa21.83■■□□□ 1.09
USP39-204ENST00000409766 LRRC57Q8N9N7 239 aa21.83■■□□□ 1.09
USP39-204ENST00000409766 SAAL1Q96ER3 474 aa21.83■■□□□ 1.09
USP39-204ENST00000409766 OTUD5Q96G74 571 aa21.83■■□□□ 1.09
USP39-204ENST00000409766 UBE2TQ9NPD8 197 aaPredicted RBP21.83■■□□□ 1.09
USP39-204ENST00000409766 EHD2Q9NZN4 543 aa21.83■■□□□ 1.09
USP39-204ENST00000409766 SOWAHBA6NEL2 793 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 PAFAH1B1P43034 410 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 MTERF2Q49AM1 385 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 ERO1BQ86YB8 467 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 PARD3BQ8TEW8 1205 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 VTI1AQ96AJ9 217 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 CLMNQ96JQ2 1002 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 ZNF302Q9NR11 478 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 SMARCAL1Q9NZC9 954 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 ARHGAP28Q9P2N2 729 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 BRDTQ58F21 947 aaPredicted RBP21.82■■□□□ 1.08
USP39-204ENST00000409766 HDXQ7Z353 690 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 NCAPG2Q86XI2 1143 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 IFT74Q96LB3 600 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 POLR3FQ9H1D9 316 aaPredicted RBP21.82■■□□□ 1.08
USP39-204ENST00000409766 SUGCTQ9HAC7 445 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 ST7Q9NRC1 585 aa21.82■■□□□ 1.08
USP39-204ENST00000409766 IGKV6D-21A0A0A0MT36 114 aa21.81■■□□□ 1.08
USP39-204ENST00000409766 NOP2P46087 812 aaKnown RBP21.81■■□□□ 1.08
USP39-204ENST00000409766 GALCP54803 685 aa21.81■■□□□ 1.08
USP39-204ENST00000409766 IRX3P78415 501 aaPredicted RBP21.81■■□□□ 1.08
USP39-204ENST00000409766 CFAP221Q4G0U5 840 aa21.81■■□□□ 1.08
USP39-204ENST00000409766 TAS1R3Q7RTX0 852 aa21.81■■□□□ 1.08
USP39-204ENST00000409766 ANKRD13AQ8IZ07 590 aa21.81■■□□□ 1.08
USP39-204ENST00000409766 TPCN2Q8NHX9 752 aa21.81■■□□□ 1.08
USP39-204ENST00000409766 MS4A14Q96JA4 679 aa21.81■■□□□ 1.08
USP39-204ENST00000409766 MFSD14AQ96MC6 490 aa21.81■■□□□ 1.08
USP39-204ENST00000409766 PACSIN2Q9UNF0 486 aaPredicted RBP21.81■■□□□ 1.08
USP39-204ENST00000409766 CXCL11O14625 94 aa21.8■■□□□ 1.08
USP39-204ENST00000409766 OATP04181 439 aa21.8■■□□□ 1.08
USP39-204ENST00000409766 UBA1P22314 1058 aaKnown RBP21.8■■□□□ 1.08
USP39-204ENST00000409766 EMC2Q15006 297 aa21.8■■□□□ 1.08
USP39-204ENST00000409766 POMGNT1Q8WZA1 660 aa21.8■■□□□ 1.08
USP39-204ENST00000409766 ASCC2Q9H1I8 757 aaPredicted RBP21.8■■□□□ 1.08
USP39-204ENST00000409766 SPDYE5A6NIY4 337 aa21.8■■□□□ 1.08
USP39-204ENST00000409766 CNMDO75829 334 aa21.8■■□□□ 1.08
USP39-204ENST00000409766 C9orf131Q5VYM1 1079 aa21.8■■□□□ 1.08
USP39-204ENST00000409766 TMC2Q8TDI7 906 aa21.8■■□□□ 1.08
USP39-204ENST00000409766 CCDC127Q96BQ5 260 aa21.8■■□□□ 1.08
USP39-204ENST00000409766 COQ4Q9Y3A0 265 aa21.8■■□□□ 1.08
USP39-204ENST00000409766 LRRC37A2A6NM11 1700 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 LRRIQ3A6PVS8 624 aaPredicted RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 H0YCG3 227 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 HNRNPDLO14979 420 aaKnown RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 FARP2O94887 1054 aaPredicted RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 GARTP22102 1010 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 ABCD1P33897 745 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 POLGP54098 1239 aaPredicted RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 MAP2K1Q02750 393 aaPredicted RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 GABPB1Q06547 395 aaPredicted RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 KRT39Q6A163 491 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 CCDC70Q6NSX1 233 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 MOB2Q70IA6 237 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 SLFN11Q7Z7L1 901 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 MSL3Q8N5Y2 521 aaKnown RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 CDCA5Q96FF9 252 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 PAGR1Q9BTK6 254 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 LRRC1Q9BTT6 524 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 NIFKQ9BYG3 293 aaKnown RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 DHX33Q9H6R0 707 aaKnown RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 PRDM10Q9NQV6 1147 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 KCNG1Q9UIX4 513 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 TNFAIP3P21580 790 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 SMC1AQ14683 1233 aaKnown RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 SEMA4DQ92854 862 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 KCNN1Q92952 543 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 CEP89Q96ST8 783 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 POP1Q99575 1024 aaKnown RBP21.79■■□□□ 1.08
USP39-204ENST00000409766 R3HDMLQ9H3Y0 253 aa21.79■■□□□ 1.08
USP39-204ENST00000409766 TMEM8AQ9HCN3 771 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms