RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TMEM132AQ24JP5 1023 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 CCDC38Q502W7 563 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 CHADLQ6NUI6 762 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 CAPN12Q6ZSI9 719 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 XXYLT1Q8NBI6 393 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 TAS1R2Q8TE23 839 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 SPIRE2Q8WWL2 714 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 ZNF653Q96CK0 615 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 RANBP17Q9H2T7 1088 aaKnown RBP14.47□□□□□ -0.09
VPS54-203ENST00000409558 MLXIPLQ9NP71 852 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 OLFML3Q9NRN5 406 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 FEM1BQ9UK73 627 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 ZC3H4Q9UPT8 1303 aaKnown RBP14.47□□□□□ -0.09
VPS54-203ENST00000409558 TCRBV7S2A1N4TA0A589 114 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 LRRIQ4A6NIV6 560 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 CCNE2O96020 404 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 HP1BP3Q5SSJ5 553 aaPredicted RBP14.47□□□□□ -0.09
VPS54-203ENST00000409558 MOXD1Q6UVY6 613 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 CPA5Q8WXQ8 436 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 MAGOHBQ96A72 148 aaKnown RBP14.47□□□□□ -0.09
VPS54-203ENST00000409558 SELENOSQ9BQE4 189 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 STK33Q9BYT3 514 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 DEFB129Q9H1M3 183 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 ALG6Q9Y672 507 aa14.47□□□□□ -0.09
VPS54-203ENST00000409558 BCRP11274 1271 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 PPFIA1Q13136 1202 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 MAPK7Q13164 816 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 PPP2R5CQ13362 524 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 UBAP2Q5T6F2 1119 aaKnown RBP14.46□□□□□ -0.09
VPS54-203ENST00000409558 BTNL9Q6UXG8 535 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 MDM1Q8TC05 714 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 FIZ1Q96SL8 496 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.46□□□□□ -0.091e-6■■■□□ 15.8
VPS54-203ENST00000409558 FOXO6A8MYZ6 492 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 EMBQ6PCB8 327 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 CCDC50Q8IVM0 306 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 CCDC105Q8IYK2 499 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 LMBR1Q8WVP7 490 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 C1orf54Q8WWF1 131 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 SEMA4DQ92854 862 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 PAGR1Q9BTK6 254 aa14.46□□□□□ -0.09
VPS54-203ENST00000409558 NT5DC3Q86UY8 548 aa14.46□□□□□ -0.1
VPS54-203ENST00000409558 MGARPQ8TDB4 240 aa14.46□□□□□ -0.1
VPS54-203ENST00000409558 SYN2Q92777 582 aaPredicted RBP14.46□□□□□ -0.1
VPS54-203ENST00000409558 ACCSQ96QU6 501 aa14.46□□□□□ -0.1
VPS54-203ENST00000409558 AGPAT1Q99943 283 aa14.46□□□□□ -0.1
VPS54-203ENST00000409558 UTP11Q9Y3A2 253 aaKnown RBP14.46□□□□□ -0.1
VPS54-203ENST00000409558 BZW2Q9Y6E2 419 aaKnown RBP14.46□□□□□ -0.1
VPS54-203ENST00000409558 ZNF536O15090 1300 aa14.46□□□□□ -0.1
VPS54-203ENST00000409558 HSD17B3P37058 310 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 SNRNP35Q16560 246 aaKnown RBP14.45□□□□□ -0.1
VPS54-203ENST00000409558 PRUNE1Q86TP1 453 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 ZBTB10Q96DT7 871 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 ZBTB45Q96K62 511 aaPredicted RBP14.45□□□□□ -0.1
VPS54-203ENST00000409558 UBR3Q6ZT12 1888 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 ZBED4O75132 1171 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 ICAM1P05362 532 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 ZNF662Q6ZS27 426 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 OTUD6AQ7L8S5 288 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 ATG4AQ8WYN0 398 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 TMEM117Q9H0C3 514 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 TAF1DQ9H5J8 278 aaPredicted RBP14.45□□□□□ -0.1
VPS54-203ENST00000409558 HACL1Q9UJ83 578 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 COMTP21964 271 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 CNGA1P29973 690 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 MARSP56192 900 aaKnown RBP14.45□□□□□ -0.1
VPS54-203ENST00000409558 FSTL1Q12841 308 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 ZBTB33Q86T24 672 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 FAM160B2Q86V87 743 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 BSNDQ8WZ55 320 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 PCDHB18PQ96TA0 734 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 H0YHG0 523 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 NR1D1P20393 614 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 LMNB1P20700 586 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 IFNAR2P48551 515 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 GMPSP49915 693 aaPredicted RBP14.45□□□□□ -0.1
VPS54-203ENST00000409558 DMP1Q13316 513 aaPredicted RBP14.45□□□□□ -0.1
VPS54-203ENST00000409558 SRLQ86TD4 932 aa14.45□□□□□ -0.1
VPS54-203ENST00000409558 ACSF2Q96CM8 615 aaPredicted RBP14.45□□□□□ -0.1
VPS54-203ENST00000409558 AGO4Q9HCK5 861 aaKnown RBP14.45□□□□□ -0.1
VPS54-203ENST00000409558 FRMPD4Q14CM0 1322 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 DNAH12Q6ZR08 3092 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 EBAG9O00559 213 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 CSDE1O75534 798 aaKnown RBP14.44□□□□□ -0.1
VPS54-203ENST00000409558 PRLRP16471 622 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 FGFR4P22455 802 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 NOP9Q86U38 636 aaKnown RBP14.44□□□□□ -0.1
VPS54-203ENST00000409558 RTKN2Q8IZC4 609 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 IVLP07476 585 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 MYZAPP0CAP1 466 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 NPTX2P47972 431 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 LRRC57Q8N9N7 239 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 CNKSR2Q8WXI2 1034 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 CLEC4DQ8WXI8 215 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 RFFLQ8WZ73 363 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 VIPAS39Q9H9C1 493 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 PIK3CDO00329 1044 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 CD58P19256 250 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 SMTNP53814 917 aa14.44□□□□□ -0.1
VPS54-203ENST00000409558 PGM5Q15124 567 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms