RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CDC27P30260 824 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 IREB2P48200 963 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 KPNB1Q14974 876 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 CEP55Q53EZ4 464 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 GAS2L3Q86XJ1 694 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 MFN1Q8IWA4 741 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 TRIM59Q8IWR1 403 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 LRRC47Q8N1G4 583 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 MCUQ8NE86 351 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 ZNF564Q8TBZ8 553 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 ULK4Q96C45 1275 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 TGS1Q96RS0 853 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 EPAS1Q99814 870 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 KLC4Q9NSK0 619 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 GID8Q9NWU2 228 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 HOXC10Q9NYD6 342 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 UTP6Q9NYH9 597 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 WARS2Q9UGM6 360 aaKnown RBP6.47□□□□□ -1.37
SCN1A-203ENST00000409050 ERVK-7P63135 1459 aa6.47□□□□□ -1.37
SCN1A-203ENST00000409050 SNTNA6NMZ2 147 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 ENC1O14682 589 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 SEC31AO94979 1220 aaKnown RBP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 RPSAP08865 295 aaKnown RBP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 ELF1P32519 619 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 NNMTP40261 264 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 ANXA11P50995 505 aaKnown RBP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 KLC1Q07866 573 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 WASHC5Q12768 1159 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 KRT72Q14CN4 511 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 IMPG1Q17R60 797 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 WLSQ5T9L3 541 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 HORMAD1Q86X24 394 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 NCAPG2Q86XI2 1143 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 RDM1Q8NG50 284 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 PI4K2BQ8TCG2 481 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 HEXIM2Q96MH2 286 aaKnown RBP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 ANAPC7Q9UJX3 599 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 PXDNLA1KZ92 1463 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 FRMPD2Q68DX3 1309 aaPredicted RBP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 IGF2BP3O00425 579 aaKnown RBP eCLIP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 NPR1P16066 1061 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 S100A5P33763 92 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 TFAMQ00059 246 aaKnown RBP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 MRPL28Q13084 256 aaKnown RBP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 GRAPQ13588 217 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 EPHA7Q15375 998 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 NAA35Q5VZE5 725 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 GRAPLQ8TC17 118 aaPredicted RBP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 C19orf60Q96EN9 201 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 IFT43Q96FT9 208 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 MRPL48Q96GC5 212 aaKnown RBP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 TNIP3Q96KP6 325 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 SAMSN1Q9NSI8 373 aaKnown RBP6.46□□□□□ -1.37
SCN1A-203ENST00000409050 KIF17Q9P2E2 1029 aa6.46□□□□□ -1.37
SCN1A-203ENST00000409050 SPDYE2BA6NHP3 402 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 TOMM70O94826 608 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 ANP32DO95626 131 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 SPDYE6P0CI01 402 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 RALBP11234 206 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 MDH1P40925 334 aaKnown RBP6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PHKA1P46020 1223 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 BCAMP50895 628 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 NUP107P57740 925 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 IL1RL1Q01638 556 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 FAM83BQ5T0W9 1011 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 KIAA0825Q8IV33 1275 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 BBS7Q8IWZ6 715 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 ABTB1Q969K4 478 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-203ENST00000409050 NCLNQ969V3 563 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 CCDC126Q96EE4 140 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 CFAP36Q96G28 342 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF512BQ96KM6 892 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-203ENST00000409050 FSD1LQ9BXM9 530 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 ZWILCHQ9H900 591 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 TRAF3IP3Q9Y228 551 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PDS5AQ29RF7 1337 aaKnown RBP6.46□□□□□ -1.38
SCN1A-203ENST00000409050 HUS1O60921 280 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PHF2O75151 1096 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 SUPT3HO75486 399 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 GSNP06396 782 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 STXBP2Q15833 593 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 DPP9Q86TI2 863 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 ELMOD1Q8N336 334 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 ANKRD13CQ8N6S4 541 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PIGSQ96S52 555 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 MRPL4Q9BYD3 311 aaKnown RBP6.46□□□□□ -1.38
SCN1A-203ENST00000409050 COG4Q9H9E3 785 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PLEKHA5Q9HAU0 1116 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PRDM16Q9HAZ2 1276 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PALLDQ8WX93 1383 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 GOLGA8SH3BPF8 625 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PRLRP16471 622 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 SAT1P21673 171 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PSMA4P25789 261 aaKnown RBP6.46□□□□□ -1.38
SCN1A-203ENST00000409050 ACADSBP45954 432 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PIGHQ14442 188 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-203ENST00000409050 ZYXQ15942 572 aaKnown RBP6.46□□□□□ -1.38
SCN1A-203ENST00000409050 PDXDC2PQ6P474 469 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 MMGT1Q8N4V1 131 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 SDR42E1Q8WUS8 393 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms