RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 ABHD14A-ACY1A0A1B0GW23 586 aa32.29■■■□□ 2.76
USP42-202ENST00000404008 ACKR2O00590 384 aa32.29■■■□□ 2.76
USP42-202ENST00000404008 B4GALT5O43286 388 aa32.29■■■□□ 2.76
USP42-202ENST00000404008 EDN1P05305 212 aa32.29■■■□□ 2.76
USP42-202ENST00000404008 BMP8BP34820 402 aa32.29■■■□□ 2.76
USP42-202ENST00000404008 DSC3Q14574 896 aa32.29■■■□□ 2.76
USP42-202ENST00000404008 KMT5BQ4FZB7 885 aa32.29■■■□□ 2.76
USP42-202ENST00000404008 LINC01599Q8WXQ3 324 aa32.29■■■□□ 2.76
USP42-202ENST00000404008 FGFBP2Q9BYJ0 223 aa32.29■■■□□ 2.76
USP42-202ENST00000404008 CHST12Q9NRB3 414 aa32.29■■■□□ 2.76
USP42-202ENST00000404008 PIN4Q9Y237 131 aaKnown RBP32.29■■■□□ 2.76
USP42-202ENST00000404008 CNTNAP2Q9UHC6 1331 aa32.28■■■□□ 2.76
USP42-202ENST00000404008 PTPRSQ13332 1948 aa32.28■■■□□ 2.76
USP42-202ENST00000404008 LAMA2P24043 3122 aaKnown RBP32.28■■■□□ 2.76
USP42-202ENST00000404008 MGEA5O60502 916 aa32.28■■■□□ 2.76
USP42-202ENST00000404008 HOXA11P31270 313 aaPredicted RBP32.28■■■□□ 2.76
USP42-202ENST00000404008 ABCD1P33897 745 aa32.28■■■□□ 2.76
USP42-202ENST00000404008 GTF2BQ00403 316 aa32.28■■■□□ 2.76
USP42-202ENST00000404008 FAM26FQ5R3K3 315 aa32.28■■■□□ 2.76
USP42-202ENST00000404008 HERVK_113Q902F9 699 aa32.28■■■□□ 2.76
USP42-202ENST00000404008 STRA6Q9BX79 667 aa32.28■■■□□ 2.76
USP42-202ENST00000404008 EXOC1Q9NV70 894 aa32.28■■■□□ 2.76
USP42-202ENST00000404008 PPP1R37O75864 691 aa32.27■■■□□ 2.76
USP42-202ENST00000404008 ARF4P18085 180 aaPredicted RBP32.27■■■□□ 2.76
USP42-202ENST00000404008 AXLP30530 894 aa32.27■■■□□ 2.76
USP42-202ENST00000404008 CASP5P51878 434 aa32.27■■■□□ 2.76
USP42-202ENST00000404008 NCBP1Q09161 790 aaKnown RBP32.27■■■□□ 2.76
USP42-202ENST00000404008 PRPF4BQ13523 1007 aaKnown RBP32.27■■■□□ 2.76
USP42-202ENST00000404008 ZC2HC1CQ53FD0 456 aaPredicted RBP32.27■■■□□ 2.76
USP42-202ENST00000404008 C9orf50Q5SZB4 431 aa32.27■■■□□ 2.76
USP42-202ENST00000404008 RTN4RL1Q86UN2 441 aaPredicted RBP32.27■■■□□ 2.76
USP42-202ENST00000404008 TSPYL2Q9H2G4 693 aaPredicted RBP32.27■■■□□ 2.76
USP42-202ENST00000404008 TBX20Q9UMR3 447 aa32.27■■■□□ 2.76
USP42-202ENST00000404008 TTLL13PA6NNM8 815 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 EFCAB14O75071 495 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 GCNT3O95395 438 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 MBD3O95983 291 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 STRN3Q13033 797 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 SPATA20Q8TB22 786 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 ERCC4Q92889 916 aaPredicted RBP32.26■■■□□ 2.75
USP42-202ENST00000404008 CPB2Q96IY4 423 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 ADAM2Q99965 735 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 CLSTN2Q9H4D0 955 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 RGS18Q9NS28 235 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 USP20Q9Y2K6 914 aa32.26■■■□□ 2.75
USP42-202ENST00000404008 SMC2O95347 1197 aa32.25■■■□□ 2.75
USP42-202ENST00000404008 MYBP10242 640 aa32.25■■■□□ 2.75
USP42-202ENST00000404008 ZSCAN20P17040 1043 aaPredicted RBP32.25■■■□□ 2.75
USP42-202ENST00000404008 ALCAMQ13740 583 aa32.25■■■□□ 2.75
USP42-202ENST00000404008 KCNB1Q14721 858 aa32.25■■■□□ 2.75
USP42-202ENST00000404008 NT5DC1Q5TFE4 455 aa32.25■■■□□ 2.75
USP42-202ENST00000404008 GLIS3Q8NEA6 775 aa32.25■■■□□ 2.75
USP42-202ENST00000404008 CCDC47Q96A33 483 aaKnown RBP32.25■■■□□ 2.75
USP42-202ENST00000404008 HVCN1Q96D96 273 aa32.25■■■□□ 2.75
USP42-202ENST00000404008 PRO3102Q9H379 93 aa32.25■■■□□ 2.75
USP42-202ENST00000404008 PCDHA5Q9Y5H7 936 aa32.25■■■□□ 2.75
USP42-202ENST00000404008 LOC101059915A0A1B0GWI6 518 aaPredicted RBP32.24■■■□□ 2.75
USP42-202ENST00000404008 ENPP3O14638 875 aa32.24■■■□□ 2.75
USP42-202ENST00000404008 RHOBTB3O94955 611 aa32.24■■■□□ 2.75
USP42-202ENST00000404008 WDR5P61964 334 aaKnown RBP32.24■■■□□ 2.75
USP42-202ENST00000404008 PSMD2Q13200 908 aa32.24■■■□□ 2.75
USP42-202ENST00000404008 SHHQ15465 462 aa32.24■■■□□ 2.75
USP42-202ENST00000404008 CAMK4Q16566 473 aa32.24■■■□□ 2.75
USP42-202ENST00000404008 RASIP1Q5U651 963 aa32.24■■■□□ 2.75
USP42-202ENST00000404008 NOTUMQ6P988 496 aa32.24■■■□□ 2.75
USP42-202ENST00000404008 MRPL4Q9BYD3 311 aaKnown RBP32.24■■■□□ 2.75
USP42-202ENST00000404008 CXXC1Q9P0U4 656 aaPredicted RBP32.24■■■□□ 2.75
USP42-202ENST00000404008 PCDHB13Q9Y5F0 798 aa32.24■■■□□ 2.75
USP42-202ENST00000404008 A0A1B0GUA9 196 aa32.23■■■□□ 2.75
USP42-202ENST00000404008 CHRDL2Q6WN34 429 aa32.23■■■□□ 2.75
USP42-202ENST00000404008 EPM2AIP1Q7L775 607 aaPredicted RBP32.23■■■□□ 2.75
USP42-202ENST00000404008 MAP4K3Q8IVH8 894 aa32.23■■■□□ 2.75
USP42-202ENST00000404008 SMARCE1Q969G3 411 aa32.23■■■□□ 2.75
USP42-202ENST00000404008 CCDC51Q96ER9 411 aa32.23■■■□□ 2.75
USP42-202ENST00000404008 GSDMAQ96QA5 445 aa32.23■■■□□ 2.75
USP42-202ENST00000404008 SLC39A2Q9NP94 309 aa32.23■■■□□ 2.75
USP42-202ENST00000404008 ZBBXA8MT70 800 aa32.22■■■□□ 2.75
USP42-202ENST00000404008 TWF2Q6IBS0 349 aaKnown RBP32.22■■■□□ 2.75
USP42-202ENST00000404008 LIN28BQ6ZN17 250 aaKnown RBP eCLIP32.22■■■□□ 2.75
USP42-202ENST00000404008 ACO2Q99798 780 aaKnown RBP32.22■■■□□ 2.75
USP42-202ENST00000404008 TRAIPQ9BWF2 469 aa32.22■■■□□ 2.75
USP42-202ENST00000404008 MTIF3Q9H2K0 278 aaKnown RBP32.22■■■□□ 2.75
USP42-202ENST00000404008 C1orf112Q9NSG2 853 aa32.22■■■□□ 2.75
USP42-202ENST00000404008 SARSP49591 514 aaKnown RBP32.21■■■□□ 2.75
USP42-202ENST00000404008 STK4Q13043 487 aa32.21■■■□□ 2.75
USP42-202ENST00000404008 L1TD1Q5T7N2 865 aaKnown RBP32.21■■■□□ 2.75
USP42-202ENST00000404008 PRPF38BQ5VTL8 546 aaKnown RBP32.21■■■□□ 2.75
USP42-202ENST00000404008 STXBP4Q6ZWJ1 553 aa32.21■■■□□ 2.75
USP42-202ENST00000404008 KIAA0895Q8NCT3 520 aa32.21■■■□□ 2.75
USP42-202ENST00000404008 RNPC3Q96LT9 517 aaKnown RBP32.21■■■□□ 2.75
USP42-202ENST00000404008 TARS2Q9BW92 718 aaKnown RBP32.21■■■□□ 2.75
USP42-202ENST00000404008 NUP62CLQ9H1M0 184 aa32.21■■■□□ 2.75
USP42-202ENST00000404008 PDZD7Q9H5P4 517 aa32.21■■■□□ 2.75
USP42-202ENST00000404008 RMND1Q9NWS8 449 aa32.21■■■□□ 2.75
USP42-202ENST00000404008 TTC3P53804 2025 aa32.21■■■□□ 2.75
USP42-202ENST00000404008 EIF3DO15371 548 aaKnown RBP eCLIP32.2■■■□□ 2.75
USP42-202ENST00000404008 PTMSP20962 102 aa32.2■■■□□ 2.75
USP42-202ENST00000404008 KCNJ6P48051 423 aa32.2■■■□□ 2.75
USP42-202ENST00000404008 KCNA1Q09470 495 aa32.2■■■□□ 2.75
USP42-202ENST00000404008 TMEM132AQ24JP5 1023 aa32.2■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms