RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 SMARCE1Q969G3 411 aa17.55■□□□□ 0.4
HMGA1-204ENST00000401473 C2orf40Q9H1Z8 148 aa17.55■□□□□ 0.4
HMGA1-204ENST00000401473 EXOC1Q9NV70 894 aa17.55■□□□□ 0.4
HMGA1-204ENST00000401473 CDH23Q9H251 3354 aa17.55■□□□□ 0.4
HMGA1-204ENST00000401473 GPR182O15218 404 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 GCNT3O95395 438 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 HOXD13P35453 343 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 MAPK6Q16659 721 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 FAM187BQ17R55 369 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 EPM2AIP1Q7L775 607 aaPredicted RBP17.54■□□□□ 0.4
HMGA1-204ENST00000401473 RTN4RL1Q86UN2 441 aaPredicted RBP17.54■□□□□ 0.4
HMGA1-204ENST00000401473 TBX20Q9UMR3 447 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 GDAQ9Y2T3 454 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 ACKR2O00590 384 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 MGEA5O60502 916 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 TSPAN1O60635 241 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 PRPF6O94906 941 aaKnown RBP17.54■□□□□ 0.4
HMGA1-204ENST00000401473 SMC2O95347 1197 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 ARF4P18085 180 aaPredicted RBP17.54■□□□□ 0.4
HMGA1-204ENST00000401473 RFC2P35250 354 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 PAK2Q13177 524 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 CAVIN1Q6NZI2 390 aaKnown RBP17.54■□□□□ 0.4
HMGA1-204ENST00000401473 CATSPER4Q7RTX7 472 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 SMYD4Q8IYR2 804 aaPredicted RBP17.54■□□□□ 0.4
HMGA1-204ENST00000401473 IL23AQ9NPF7 189 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 MAN1B1Q9UKM7 699 aa17.54■□□□□ 0.4
HMGA1-204ENST00000401473 SZT2Q5T011 3432 aa17.53■□□□□ 0.4
HMGA1-204ENST00000401473 TRIOBPQ9H2D6 2365 aa17.53■□□□□ 0.4
HMGA1-204ENST00000401473 BIN1O00499 593 aa17.53■□□□□ 0.4
HMGA1-204ENST00000401473 PRKCBP05771 671 aa17.53■□□□□ 0.4
HMGA1-204ENST00000401473 SFPQP23246 707 aaKnown RBP eCLIP17.53■□□□□ 0.4
HMGA1-204ENST00000401473 PSMD2Q13200 908 aa17.53■□□□□ 0.4
HMGA1-204ENST00000401473 PPP4R3CPQ6ZMV5 832 aa17.53■□□□□ 0.4
HMGA1-204ENST00000401473 CDR2LQ86X02 465 aaPredicted RBP17.53■□□□□ 0.4
HMGA1-204ENST00000401473 SCFD1Q8WVM8 642 aa17.53■□□□□ 0.4
HMGA1-204ENST00000401473 CPB2Q96IY4 423 aa17.53■□□□□ 0.4
HMGA1-204ENST00000401473 PRMT7Q9NVM4 692 aaPredicted RBP17.53■□□□□ 0.4
HMGA1-204ENST00000401473 PTMSP20962 102 aa17.52■□□□□ 0.4
HMGA1-204ENST00000401473 PPIGQ13427 754 aaKnown RBP eCLIP17.52■□□□□ 0.4
HMGA1-204ENST00000401473 RBM43Q6ZSC3 357 aaKnown RBP17.52■□□□□ 0.4
HMGA1-204ENST00000401473 ZNF365Q70YC5 407 aa17.52■□□□□ 0.4
HMGA1-204ENST00000401473 RPUSD2Q8IZ73 545 aaKnown RBP17.52■□□□□ 0.4
HMGA1-204ENST00000401473 ZNF507Q8TCN5 953 aa17.52■□□□□ 0.4
HMGA1-204ENST00000401473 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.52■□□□□ 0.47e-12■■■■□ 22.2
HMGA1-204ENST00000401473 TARS2Q9BW92 718 aaKnown RBP17.52■□□□□ 0.4
HMGA1-204ENST00000401473 PRO3102Q9H379 93 aa17.52■□□□□ 0.4
HMGA1-204ENST00000401473 AGPAT5Q9NUQ2 364 aa17.52■□□□□ 0.4
HMGA1-204ENST00000401473 MAPK8IP1Q9UQF2 711 aa17.52■□□□□ 0.4
HMGA1-204ENST00000401473 PCDHB13Q9Y5F0 798 aa17.52■□□□□ 0.4
HMGA1-204ENST00000401473 ERLIN2O94905 339 aa17.52■□□□□ 0.39
HMGA1-204ENST00000401473 PRPF4BQ13523 1007 aaKnown RBP17.52■□□□□ 0.39
HMGA1-204ENST00000401473 TMEM240Q5SV17 173 aa17.52■□□□□ 0.39
HMGA1-204ENST00000401473 C9orf50Q5SZB4 431 aa17.52■□□□□ 0.39
HMGA1-204ENST00000401473 SLC17A8Q8NDX2 589 aa17.52■□□□□ 0.39
HMGA1-204ENST00000401473 PRIMPOLQ96LW4 560 aa17.52■□□□□ 0.39
HMGA1-204ENST00000401473 PHLPP2Q6ZVD8 1323 aa17.52■□□□□ 0.39
HMGA1-204ENST00000401473 TTC3P53804 2025 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 A0A1B0GUA9 196 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 TISP43B9A030 160 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 H0YCG3 227 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 MORC3Q14149 939 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 DSC3Q14574 896 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 PCBP1Q15365 356 aaKnown RBP eCLIP17.51■□□□□ 0.394e-50■■■■■ 45.9
HMGA1-204ENST00000401473 CCDC183Q5T5S1 534 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 ZNF658Q5TYW1 1059 aaPredicted RBP17.51■□□□□ 0.39
HMGA1-204ENST00000401473 CHRDL2Q6WN34 429 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 OTOP2Q7RTS6 562 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 MAP4K3Q8IVH8 894 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 LINC01599Q8WXQ3 324 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 SEPT8Q92599 483 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 ZBTB45Q96K62 511 aaPredicted RBP17.51■□□□□ 0.39
HMGA1-204ENST00000401473 ACO2Q99798 780 aaKnown RBP17.51■□□□□ 0.39
HMGA1-204ENST00000401473 PIN4Q9Y237 131 aaKnown RBP17.51■□□□□ 0.39
HMGA1-204ENST00000401473 CHD7Q9P2D1 2997 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 MICAL3Q7RTP6 2002 aa17.51■□□□□ 0.39
HMGA1-204ENST00000401473 STRN3Q13033 797 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 L1TD1Q5T7N2 865 aaKnown RBP17.5■□□□□ 0.39
HMGA1-204ENST00000401473 SLC39A4Q6P5W5 647 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 CNKSR3Q6P9H4 555 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 ADAM2Q99965 735 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 UBE2OQ9C0C9 1292 aaKnown RBP17.5■□□□□ 0.39
HMGA1-204ENST00000401473 PTPRHQ9HD43 1115 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 RMND1Q9NWS8 449 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 CNTNAP2Q9UHC6 1331 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 CHD9Q3L8U1 2897 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.5■□□□□ 0.39
HMGA1-204ENST00000401473 ANKRD63C9JTQ0 380 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 ENPP3O14638 875 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 PFKMP08237 780 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 SCP2P22307 547 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 PRCPP42785 496 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 SHHQ15465 462 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 SKOR2Q2VWA4 1001 aaPredicted RBP17.5■□□□□ 0.39
HMGA1-204ENST00000401473 EEF1DP3Q658K8 133 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 NELFCDQ8IXH7 590 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 CCDC47Q96A33 483 aaKnown RBP17.5■□□□□ 0.39
HMGA1-204ENST00000401473 MRPL4Q9BYD3 311 aaKnown RBP17.5■□□□□ 0.39
HMGA1-204ENST00000401473 HAPLN2Q9GZV7 340 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 CHST12Q9NRB3 414 aa17.5■□□□□ 0.39
HMGA1-204ENST00000401473 CXXC1Q9P0U4 656 aaPredicted RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms