RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.62■■□□□ 1.21
CTCF-202ENST00000401394 A0A0A6YYK5 440 aaPredicted RBP22.62■■□□□ 1.21
CTCF-202ENST00000401394 TMEM150BA6NC51 233 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 DLATP10515 647 aaKnown RBP22.62■■□□□ 1.21
CTCF-202ENST00000401394 RPL13P26373 211 aaKnown RBP22.62■■□□□ 1.21
CTCF-202ENST00000401394 PIGWQ7Z7B1 504 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 CRYGNQ8WXF5 182 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 SLC24A3Q9HC58 644 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 SLITRK3O94933 977 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 SGPL1O95470 568 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 CLNS1AP54105 237 aaKnown RBP22.62■■□□□ 1.21
CTCF-202ENST00000401394 DRP2Q13474 957 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 RPUSD2Q8IZ73 545 aaKnown RBP22.62■■□□□ 1.21
CTCF-202ENST00000401394 FIZ1Q96SL8 496 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 PCDHA3Q9Y5H8 950 aa22.62■■□□□ 1.21
CTCF-202ENST00000401394 GPATCH4Q5T3I0 446 aaKnown RBP22.61■■□□□ 1.21
CTCF-202ENST00000401394 TRPM8Q7Z2W7 1104 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 AGAP11Q8TF27 550 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 KDM4CQ9H3R0 1056 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 RIPK2O43353 540 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 RARAP10276 462 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 PPP3CAQ08209 521 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 NAA25Q14CX7 972 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 SLFN12Q8IYM2 578 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 HERPUD2Q9BSE4 406 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 CARD9Q9H257 536 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 VEZTQ9HBM0 779 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 AGPAT3Q9NRZ7 376 aa22.61■■□□□ 1.21
CTCF-202ENST00000401394 PFASO15067 1338 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 GOLGA8IPA6NC78 632 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 GOLGA8JA6NMD2 632 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 EXOC3O60645 756 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 LMNB1P20700 586 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 CNGA2Q16280 664 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 HOOK3Q86VS8 718 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 CYP4X1Q8N118 509 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 NSMCE1Q8WV22 266 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 METTL14Q9HCE5 456 aaKnown RBP22.6■■□□□ 1.21
CTCF-202ENST00000401394 KCNK9Q9NPC2 374 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 APEX2Q9UBZ4 518 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 GOLGA6L10A0A0M3HER8 536 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 RASGRF2O14827 1237 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 TOM1O60784 492 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 CLSTN1O94985 981 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 MYL7Q01449 175 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 RNASELQ05823 741 aaKnown RBP22.6■■□□□ 1.21
CTCF-202ENST00000401394 ODR4Q5SWX8 454 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 PPP1R18Q6NYC8 613 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 FAM163AQ96GL9 167 aaPredicted RBP22.6■■□□□ 1.21
CTCF-202ENST00000401394 AGPAT1Q99943 283 aa22.6■■□□□ 1.21
CTCF-202ENST00000401394 CYP3A7-CYP3A51PA0A087WV96 503 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 CLDN3O15551 220 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 CFBP00751 764 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 NUDT17P0C025 328 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 CYP3A7P24462 503 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 TRAPPC3LQ5T215 181 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 DYDC1Q8WWB3 177 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 SLC12A4Q9UP95 1085 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 NCANO14594 1321 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 EMSYQ7Z589 1322 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 TP73O15350 636 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 CHRNB2P17787 502 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 SSTR3P32745 418 aaPredicted RBP22.59■■□□□ 1.21
CTCF-202ENST00000401394 HP1BP3Q5SSJ5 553 aaPredicted RBP22.59■■□□□ 1.21
CTCF-202ENST00000401394 KIAA0825Q8IV33 1275 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 ERMNQ8TAM6 284 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 MIEF2Q96C03 454 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 SRRM3A6NNA2 597 aaPredicted RBP22.59■■□□□ 1.21
CTCF-202ENST00000401394 DNAJC8O75937 253 aaPredicted RBP22.59■■□□□ 1.21
CTCF-202ENST00000401394 GBP2P32456 591 aaPredicted RBP22.59■■□□□ 1.21
CTCF-202ENST00000401394 ALDH5A1P51649 535 aaPredicted RBP22.59■■□□□ 1.21
CTCF-202ENST00000401394 NUGGCQ68CJ6 796 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 C1orf186Q6ZWK4 172 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 SLC47A2Q86VL8 602 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 CBWD1Q9BRT8 395 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 SAMD15Q9P1V8 674 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 SWAP70Q9UH65 585 aa22.59■■□□□ 1.21
CTCF-202ENST00000401394 F5H6K3 240 aa22.58■■□□□ 1.21
CTCF-202ENST00000401394 IGF2BP3O00425 579 aaKnown RBP eCLIP22.58■■□□□ 1.21
CTCF-202ENST00000401394 CETPP11597 493 aa22.58■■□□□ 1.21
CTCF-202ENST00000401394 APOBEC3HQ6NTF7 200 aaKnown RBP22.58■■□□□ 1.21
CTCF-202ENST00000401394 FAM178BQ8IXR5 827 aa22.58■■□□□ 1.21
CTCF-202ENST00000401394 LMO3Q8TAP4 145 aa22.58■■□□□ 1.21
CTCF-202ENST00000401394 PLEKHO2Q8TD55 490 aa22.58■■□□□ 1.21
CTCF-202ENST00000401394 KCNV2Q8TDN2 545 aa22.58■■□□□ 1.21
CTCF-202ENST00000401394 RMDN2Q96LZ7 410 aa22.58■■□□□ 1.21
CTCF-202ENST00000401394 CNOT10Q9H9A5 744 aaKnown RBP22.58■■□□□ 1.21
CTCF-202ENST00000401394 AAASQ9NRG9 546 aa22.58■■□□□ 1.21
CTCF-202ENST00000401394 TMEM120BA0PK00 339 aa22.58■■□□□ 1.2
CTCF-202ENST00000401394 CCDC169A6NNP5 214 aa22.58■■□□□ 1.2
CTCF-202ENST00000401394 PHF2O75151 1096 aa22.58■■□□□ 1.2
CTCF-202ENST00000401394 KRT16P08779 473 aa22.58■■□□□ 1.2
CTCF-202ENST00000401394 NPEPPSP55786 919 aa22.58■■□□□ 1.2
CTCF-202ENST00000401394 FAM182AQ5T1J6 154 aa22.58■■□□□ 1.2
CTCF-202ENST00000401394 SYCP3Q8IZU3 236 aa22.58■■□□□ 1.2
CTCF-202ENST00000401394 SLC17A8Q8NDX2 589 aa22.58■■□□□ 1.2
CTCF-202ENST00000401394 MBOAT7Q96N66 472 aa22.58■■□□□ 1.2
CTCF-202ENST00000401394 CDC42EP4Q9H3Q1 356 aaKnown RBP22.58■■□□□ 1.2
CTCF-202ENST00000401394 ZBTB21Q9ULJ3 1066 aa22.58■■□□□ 1.2
CTCF-202ENST00000401394 ANKRD62A6NC57 917 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms