RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 KMT5BQ4FZB7 885 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 FAM109BQ6ICB4 259 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-202ENST00000394943 RNF168Q8IYW5 571 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-202ENST00000394943 ADSSL1Q8N142 457 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 SCFD1Q8WVM8 642 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 SLC9A7Q96T83 725 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 UBN1Q9NPG3 1134 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 PANK4Q9NVE7 773 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 KIAA1468Q9P260 1216 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 PLXNA4Q9HCM2 1894 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 A0A0B4J269 797 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 PPP1R3GB7ZBB8 358 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 PDXKO00764 312 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 TGFB1I1O43294 461 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 MGEA5O60502 916 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 USO1O60763 962 aaKnown RBP7.73□□□□□ -1.17
LIMA1-202ENST00000394943 POU3F3P20264 500 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-202ENST00000394943 GRM5P41594 1212 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 CEBPZQ03701 1054 aaKnown RBP7.73□□□□□ -1.17
LIMA1-202ENST00000394943 DMP1Q13316 513 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-202ENST00000394943 NPAS4Q8IUM7 802 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 CXorf38Q8TB03 319 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 DHX58Q96C10 678 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 PLEKHA5Q9HAU0 1116 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 A0A087WZ62 844 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 ENPP3O14638 875 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 SORBS3O60504 671 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 ECM2O94769 699 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-202ENST00000394943 SLC34A2O95436 690 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 KCNE1P15382 129 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 EPHB4P54760 987 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 NT5DC4Q86YG4 428 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 SMG8Q8ND04 991 aaKnown RBP7.73□□□□□ -1.17
LIMA1-202ENST00000394943 TMEM143Q96AN5 459 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 FDXACB1Q9BRP7 624 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-202ENST00000394943 GDPD2Q9HCC8 539 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 GPRC5CQ9NQ84 441 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 CNTN3Q9P232 1028 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 PADI3Q9ULW8 664 aa7.73□□□□□ -1.17
LIMA1-202ENST00000394943 CITO14578 2027 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 NPHP3-ACAD11A0A0J9YXS1 232 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 TMEM189-UBE2V1I3L0A0 370 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 LETM1O95202 739 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 STAU1O95793 577 aaKnown RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 SMAD3P84022 425 aaKnown RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 LRRC71Q8N4P6 559 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 SEPT8Q92599 483 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 CLP1Q92989 425 aaKnown RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 TOP1MTQ969P6 601 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 IFT74Q96LB3 600 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 HOOK1Q9UJC3 728 aaKnown RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 MAN1B1Q9UKM7 699 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 NR2E3Q9Y5X4 410 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 EVI5O60447 810 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 PQBP1O60828 265 aaKnown RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 CYP3A5P20815 502 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 ADSSP30520 456 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 THPOP40225 353 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 NLRP11P59045 1033 aaKnown RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 CRELD2Q6UXH1 353 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 HAUS6Q7Z4H7 955 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 SFR1Q86XK3 245 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 CD302Q8IX05 232 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 CKAP2LQ8IYA6 745 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 CMTR2Q8IYT2 770 aaKnown RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 GOLGA5Q8TBA6 731 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 DHTKD1Q96HY7 919 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 MKNK1Q9BUB5 465 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 FGFBP2Q9BYJ0 223 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 GZF1Q9H116 711 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 FAM124BQ9H5Z6 455 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 TMEM161AQ9NX61 479 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 ST3GAL5Q9UNP4 418 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 ATP11BQ9Y2G3 1177 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 PCDHB13Q9Y5F0 798 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 CCDC85CA6NKD9 419 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 TOM1L1O75674 476 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 VTNP04004 478 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 FAM163BP0C2L3 166 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 CASP5P51878 434 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 WDR5P61964 334 aaKnown RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 SP4Q02446 784 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 SLC27A1Q6PCB7 646 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 ZBTB8OSQ8IWT0 167 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 ZBTB10Q96DT7 871 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 CCDC34Q96HJ3 373 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 MFSD14AQ96MC6 490 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 ACCSQ96QU6 501 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 MRPL4Q9BYD3 311 aaKnown RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 BMP2KQ9NSY1 1161 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 DACT1Q9NYF0 836 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 CPSF3Q9UKF6 684 aaKnown RBP7.72□□□□□ -1.17
LIMA1-202ENST00000394943 GIT1Q9Y2X7 761 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 BRCA2P51587 3418 aa7.72□□□□□ -1.17
LIMA1-202ENST00000394943 PRPF40AO75400 957 aaKnown RBP7.71□□□□□ -1.17
LIMA1-202ENST00000394943 ARF4P18085 180 aaPredicted RBP7.71□□□□□ -1.17
LIMA1-202ENST00000394943 SMTNP53814 917 aa7.71□□□□□ -1.17
LIMA1-202ENST00000394943 CCDC183Q5T5S1 534 aa7.71□□□□□ -1.17
LIMA1-202ENST00000394943 SLFN12LQ6IEE8 588 aa7.71□□□□□ -1.17
LIMA1-202ENST00000394943 MPZL3Q6UWV2 235 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms