RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 GBP6Q6ZN66 633 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 EXOC8Q8IYI6 725 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 ATP8B4Q8TF62 1192 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 ZBTB45Q96K62 511 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-205ENST00000392004 UNC93B1Q9H1C4 597 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 PDE11AQ9HCR9 933 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 TOPORSQ9NS56 1045 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-205ENST00000392004 GCNT4Q9P109 453 aa11.15□□□□□ -0.62
COL6A3-205ENST00000392004 MAGEB2O15479 319 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 ZC3H11AO75152 810 aaKnown RBP eCLIP11.14□□□□□ -0.63
COL6A3-205ENST00000392004 NUMBP49757 651 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 PASD1Q8IV76 773 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 ZNF579Q8NAF0 562 aaKnown RBP11.14□□□□□ -0.63
COL6A3-205ENST00000392004 BAG1Q99933 345 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-205ENST00000392004 ACBD3Q9H3P7 528 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 GOLGA8SH3BPF8 625 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 PDGFRBP09619 1106 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 RFX1P22670 979 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 MAP2K2P36507 400 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 NPTX2P47972 431 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 WDR72Q3MJ13 1102 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 ANKRD40Q6AI12 368 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 EXOC4Q96A65 974 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 PAWRQ96IZ0 340 aaKnown RBP11.14□□□□□ -0.63
COL6A3-205ENST00000392004 POP1Q99575 1024 aaKnown RBP11.14□□□□□ -0.63
COL6A3-205ENST00000392004 PI4K2AQ9BTU6 479 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 CERS4Q9HA82 394 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 TRMT13Q9NUP7 481 aaKnown RBP11.14□□□□□ -0.63
COL6A3-205ENST00000392004 TNRC6CQ9HCJ0 1690 aaKnown RBP11.14□□□□□ -0.63
COL6A3-205ENST00000392004 SPEF2Q9C093 1822 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 N4BP2Q86UW6 1770 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-205ENST00000392004 PLCB3Q01970 1234 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 ORC1Q13415 861 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 DCUN1D2Q6PH85 259 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 TRPV6Q9H1D0 765 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 WDR70Q9NW82 654 aa11.14□□□□□ -0.63
COL6A3-205ENST00000392004 TREHO43280 583 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 FXR2P51116 673 aaKnown RBP eCLIP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 COPB1P53618 953 aaKnown RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 ATF7IP2Q5U623 682 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 SCYL2Q6P3W7 929 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 U2AF1L4Q8WU68 220 aaKnown RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 SCLYQ96I15 445 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 C12orf42Q96LP6 360 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 CBWD1Q9BRT8 395 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 PARD6BQ9BYG5 372 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 EPC1Q9H2F5 836 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 SNX25Q9H3E2 840 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 TELO2Q9Y4R8 837 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 AKR1B15C9JRZ8 316 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 MYO1CO00159 1063 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 B3GAT3O94766 335 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 GFPT2O94808 682 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 CCDC172P0C7W6 258 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 PPP1R2P41236 205 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 PPM1FP49593 454 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 CTCFP49711 727 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 CACNB2Q08289 660 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 ITGA7Q13683 1181 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 MXD4Q14582 209 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 GPAT2Q6NUI2 795 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 RSRC2Q7L4I2 434 aaKnown RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 CCDC50Q8IVM0 306 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 CCDC155Q8N6L0 562 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 MS4A4AQ96JQ5 239 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 NT5C1BQ96P26 610 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 ACAP3Q96P50 834 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 YME1L1Q96TA2 773 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 IFIH1Q9BYX4 1025 aaKnown RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 PLEKHA4Q9H4M7 779 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 VPS18Q9P253 973 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 TTLL3Q9Y4R7 772 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 SNX9Q9Y5X1 595 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 LAMB4A4D0S4 1761 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 ACTN4O43707 911 aaKnown RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 MDM2Q00987 491 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 SP2Q02086 613 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 LAMTOR4Q0VGL1 99 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 BRD3Q15059 726 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 ASIC2Q16515 512 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 DUSP28Q4G0W2 176 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 OLFML2BQ68BL8 750 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 HEXIM2Q96MH2 286 aaKnown RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 AGAP1Q9UPQ3 857 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 TIMM13Q9Y5L4 95 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 EVI5O60447 810 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 STAM2O75886 525 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 ACRP10323 421 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 BCRP11274 1271 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 PLS3P13797 630 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 SH3D19Q5HYK7 790 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 C7orf61Q8IZ16 206 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 FAM133AQ8N9E0 248 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 TRIB2Q92519 343 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 MAGEF1Q9HAY2 307 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 HESX1Q9UBX0 185 aa11.13□□□□□ -0.63
COL6A3-205ENST00000392004 MAGED2Q9UNF1 606 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-205ENST00000392004 RRN3P2A6NIE6 340 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 CAPN9O14815 690 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 KIF5CO60282 957 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms