RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 ZMYM1Q5SVZ6 1142 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 MEI1Q5TIA1 1274 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 C11orf57Q6ZUT1 292 aaPredicted RBP13.22□□□□□ -0.29
VPS13A-204ENST00000376634 NUDT18Q6ZVK8 323 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 DCTN4Q9UJW0 460 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 VCAM1P19320 739 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 DCAF4L1Q3SXM0 396 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 ELAC2Q9BQ52 826 aaKnown RBP13.22□□□□□ -0.29
VPS13A-204ENST00000376634 ZNF556Q9HAH1 456 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS13A-204ENST00000376634 ERBB4Q15303 1308 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 CEP78Q5JTW2 689 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 FAM160B2Q86V87 743 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 OR6P1Q8NGX9 317 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 PIGSQ96S52 555 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 TRAF3IP3Q9Y228 551 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 ANKARQ7Z5J8 1434 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 KRT75O95678 551 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 CDH2P19022 906 aaPredicted RBP13.22□□□□□ -0.29
VPS13A-204ENST00000376634 INPP5AQ14642 412 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 ARL6IP4Q66PJ3 421 aaKnown RBP13.22□□□□□ -0.29
VPS13A-204ENST00000376634 NLGN1Q8N2Q7 840 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 DCUN1D1Q96GG9 259 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 SNF8Q96H20 258 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 NDEL1Q9GZM8 345 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 PAIP2BQ9ULR5 123 aaKnown RBP13.22□□□□□ -0.29
VPS13A-204ENST00000376634 HECW2Q9P2P5 1572 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 CCDC15Q0P6D6 951 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 MTMR1Q13613 665 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 MCPH1Q8NEM0 835 aa13.22□□□□□ -0.29
VPS13A-204ENST00000376634 DEAF1O75398 565 aaPredicted RBP13.21□□□□□ -0.29
VPS13A-204ENST00000376634 DDX50Q9BQ39 737 aaKnown RBP13.21□□□□□ -0.29
VPS13A-204ENST00000376634 KIAA1586Q9HCI6 787 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 UBE3AQ05086 875 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 FOPNLQ96NB1 174 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 PARD6BQ9BYG5 372 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 EFCAB6Q5THR3 1501 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 USP17L3A6NCW0 530 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 USP17L4A6NCW7 530 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 USP17L1Q7RTZ2 530 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 FAM32AQ9Y421 112 aaKnown RBP13.21□□□□□ -0.29
VPS13A-204ENST00000376634 CCDC142Q17RM4 750 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 LRRC24Q50LG9 513 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 EFHC2Q5JST6 749 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 SH3TC2Q8TF17 1288 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 LZTS3O60299 673 aaPredicted RBP13.21□□□□□ -0.29
VPS13A-204ENST00000376634 MYBL1P10243 752 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 SARM1Q6SZW1 724 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 ADCK1Q86TW2 530 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 DCAF4Q8WV16 495 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 MAD2L2Q9UI95 211 aa13.21□□□□□ -0.29
VPS13A-204ENST00000376634 NR3C1P04150 777 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 PYGMP11217 842 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 BRIP1Q9BX63 1249 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 TMEM161AQ9NX61 479 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 CEP72Q9P209 647 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 MAPK6Q16659 721 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 DDX56Q9NY93 547 aaKnown RBP13.21□□□□□ -0.3
VPS13A-204ENST00000376634 PKD2L2Q9NZM6 624 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 F5H423 210 aaPredicted RBP13.21□□□□□ -0.3
VPS13A-204ENST00000376634 GPC3P51654 580 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 LRRIQ1Q96JM4 1722 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 LSG1Q9H089 658 aaKnown RBP13.21□□□□□ -0.3
VPS13A-204ENST00000376634 ECT2Q9H8V3 914 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 SLC24A3Q9HC58 644 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 PYCARDQ9ULZ3 195 aa13.21□□□□□ -0.3
VPS13A-204ENST00000376634 KCNA2P16389 499 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 CLCN6P51797 869 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 MAGOHP61326 146 aaKnown RBP13.2□□□□□ -0.3
VPS13A-204ENST00000376634 TTC39CQ8N584 583 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 ATP11CQ8NB49 1132 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 SLC13A1Q9BZW2 595 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 USP44Q9H0E7 712 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 CAPZA2P47755 286 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 DALRD3Q5D0E6 543 aaKnown RBP13.2□□□□□ -0.3
VPS13A-204ENST00000376634 PAGE5Q96GU1 130 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 NME3Q13232 169 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 PDCLQ13371 301 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 AURKCQ9UQB9 309 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 APOL1O14791 398 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 TCF3P15923 654 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 CAPRIN2Q6IMN6 1127 aaKnown RBP13.2□□□□□ -0.3
VPS13A-204ENST00000376634 EAF2Q96CJ1 260 aaPredicted RBP13.2□□□□□ -0.3
VPS13A-204ENST00000376634 SUPT3HO75486 399 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 PEX3P56589 373 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 SPDYAQ5MJ70 313 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 ALKBH5Q6P6C2 394 aaKnown RBP13.2□□□□□ -0.3
VPS13A-204ENST00000376634 SH2B2O14492 632 aaPredicted RBP13.2□□□□□ -0.3
VPS13A-204ENST00000376634 SDC4P31431 198 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 CHRNA3P32297 505 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 CTTNQ14247 550 aaKnown RBP13.2□□□□□ -0.3
VPS13A-204ENST00000376634 ZNF235Q14590 738 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 CENPPQ6IPU0 288 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 TRAF7Q6Q0C0 670 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 FAM47EQ6ZV65 393 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 OSBPL1AQ9BXW6 950 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 YIPF3Q9GZM5 350 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 CYP4F11Q9HBI6 524 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 ABCE1P61221 599 aaKnown RBP13.2□□□□□ -0.3
VPS13A-204ENST00000376634 SYTL3Q4VX76 610 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms