RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 TBC1D16Q8TBP0 767 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 RBM17Q96I25 401 aaKnown RBP22.77■■□□□ 1.24
UPF3A-202ENST00000375299 FAM20AQ96MK3 541 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 RUNDC3BQ96NL0 473 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 AGPAT1Q99943 283 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 CTTNBP2NLQ9P2B4 639 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 DBR1Q9UK59 544 aaKnown RBP22.77■■□□□ 1.24
UPF3A-202ENST00000375299 USP15Q9Y4E8 981 aaPredicted RBP22.77■■□□□ 1.24
UPF3A-202ENST00000375299 PFASO15067 1338 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 FAM13AO94988 1023 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 CCDC38Q502W7 563 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 RINT1Q6NUQ1 792 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 EXOC3L1Q86VI1 746 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 MAB21L3Q8N8X9 362 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 NSMCE1Q8WV22 266 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 ART4Q93070 314 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 POLR3CQ9BUI4 534 aaPredicted RBP22.77■■□□□ 1.24
UPF3A-202ENST00000375299 ROPN1BQ9BZX4 212 aaPredicted RBP22.77■■□□□ 1.24
UPF3A-202ENST00000375299 TAOK3Q9H2K8 898 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 ROPN1Q9HAT0 212 aaPredicted RBP22.77■■□□□ 1.24
UPF3A-202ENST00000375299 DDX4Q9NQI0 724 aaKnown RBP22.77■■□□□ 1.24
UPF3A-202ENST00000375299 HOMER3Q9NSC5 361 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 C15orf41Q9Y2V0 281 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 MPHOSPH10O00566 681 aaKnown RBP22.76■■□□□ 1.23
UPF3A-202ENST00000375299 ZNF131P52739 623 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 MYL7Q01449 175 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 SLC15A2Q16348 729 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 DYDC1Q8WWB3 177 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 ECT2Q9H8V3 914 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 VAV3Q9UKW4 847 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.76■■□□□ 1.23
UPF3A-202ENST00000375299 FAM86B1E9PN63 330 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 FAM86B2P0C5J1 330 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 TRIM49P0CI25 452 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 TRIM49CP0CI26 452 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 POLD1P28340 1107 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 KCNJ2P63252 427 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 COG2Q14746 738 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 NAA25Q14CX7 972 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 TCEAL1Q15170 157 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 GALNTL6Q49A17 601 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 ZC2HC1CQ53FD0 456 aaPredicted RBP22.76■■□□□ 1.23
UPF3A-202ENST00000375299 PAXIP1Q6ZW49 1069 aaPredicted RBP22.76■■□□□ 1.23
UPF3A-202ENST00000375299 CYFIP1Q7L576 1253 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 MYCT1Q8N699 235 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 AGAP11Q8TF27 550 aa22.76■■□□□ 1.23
UPF3A-202ENST00000375299 L3MBTL3Q96JM7 780 aaPredicted RBP22.76■■□□□ 1.23
UPF3A-202ENST00000375299 EIF2AK1Q9BQI3 630 aaKnown RBP22.76■■□□□ 1.23
UPF3A-202ENST00000375299 TMEM110-MUSTN1A8MSY1 372 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 ANKRD63C9JTQ0 380 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 BBOX1O75936 387 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 CYP1B1Q16678 543 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 LRRC4BQ9NT99 713 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 L3MBTL1Q9Y468 752 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 MSH4O15457 936 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 LRRN2O75325 713 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 ANP32DO95626 131 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 SERPINB2P05120 415 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 ADRA2BP18089 450 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 ALDH5A1P51649 535 aaPredicted RBP22.75■■□□□ 1.23
UPF3A-202ENST00000375299 PPP2R5AQ15172 486 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 FAXDC2Q96IV6 333 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 RPS6KC1Q96S38 1066 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 USP40Q9NVE5 1235 aa22.75■■□□□ 1.23
UPF3A-202ENST00000375299 UBAP1LF5GYI3 381 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 TOM1O60784 492 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 RTN2O75298 545 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 RFX1P22670 979 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 COILP38432 576 aaPredicted RBP22.74■■□□□ 1.23
UPF3A-202ENST00000375299 PEX5P50542 639 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 SLC20A1Q8WUM9 679 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 FAM212AQ96EL1 285 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 GGT7Q9UJ14 662 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 FRMD4BQ9Y2L6 1034 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 PASKQ96RG2 1323 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 FOXN3O00409 490 aaPredicted RBP22.74■■□□□ 1.23
UPF3A-202ENST00000375299 SUN1O94901 812 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 GYS1P13807 737 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 PAX7P23759 505 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 SREBF1P36956 1147 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 LRRC14Q15048 493 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 PHLDB3Q6NSJ2 640 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 CCDC105Q8IYK2 499 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 KIRREL3Q8IZU9 778 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 GBP7Q8N8V2 638 aaPredicted RBP22.74■■□□□ 1.23
UPF3A-202ENST00000375299 FGFR1OP2Q9NVK5 253 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 RGL1Q9NZL6 768 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 NOP53Q9NZM5 478 aaKnown RBP22.74■■□□□ 1.23
UPF3A-202ENST00000375299 USP21Q9UK80 565 aa22.74■■□□□ 1.23
UPF3A-202ENST00000375299 UBE4BO95155 1302 aa22.73■■□□□ 1.23
UPF3A-202ENST00000375299 TCP11X1B4DZS4 312 aa22.73■■□□□ 1.23
UPF3A-202ENST00000375299 ECM2O94769 699 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-202ENST00000375299 FTLP02792 175 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-202ENST00000375299 COMTP21964 271 aa22.73■■□□□ 1.23
UPF3A-202ENST00000375299 CYP2J2P51589 502 aa22.73■■□□□ 1.23
UPF3A-202ENST00000375299 TRMT10CQ7L0Y3 403 aaKnown RBP22.73■■□□□ 1.23
UPF3A-202ENST00000375299 HS2ST1Q7LGA3 356 aa22.73■■□□□ 1.23
UPF3A-202ENST00000375299 KSR1Q8IVT5 923 aa22.73■■□□□ 1.23
UPF3A-202ENST00000375299 MGARPQ8TDB4 240 aa22.73■■□□□ 1.23
UPF3A-202ENST00000375299 THOC1Q96FV9 657 aaKnown RBP22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms