RNA–Protein interactions for RNA: ENST00000374747.9

NPLOC4-202, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2 BASIC

Gene NPLOC4, Length 5,538 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-202ENST00000374747 ARL4CP56559 192 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 CAV1Q03135 178 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 MTMR1Q13613 665 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 CTTNQ14247 550 aaKnown RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 NLRP14Q86W24 1093 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 SLC24A3Q9HC58 644 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 RNF146Q9NTX7 359 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 TMEM260Q9NX78 707 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 TJP3O95049 919 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 ATP2C1P98194 919 aaPredicted RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 SEMA3FQ13275 785 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 PDXDC2PQ6P474 469 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 KLC3Q6P597 504 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 GOLPH3LQ9H4A5 285 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 CNOT7Q9UIV1 285 aaKnown RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 HAUS5O94927 633 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 CTDNEP1O95476 244 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 DPEP1P16444 411 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 GUCY1A2P33402 732 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 STXBP2Q15833 593 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 RSRC2Q7L4I2 434 aaKnown RBP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 EPM2AIP1Q7L775 607 aaPredicted RBP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 MAGED2Q9UNF1 606 aaPredicted RBP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 PVALEFA0A1B0GWK0 134 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 ZNF233A6NK53 670 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 CTIFO43310 598 aaKnown RBP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 LPXNO60711 386 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 C1orf146Q5VVC0 180 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 OR6B2Q6IFH4 312 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 PARP9Q8IXQ6 854 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 GIMAP8Q8ND71 665 aaPredicted RBP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 CALR3Q96L12 384 aaKnown RBP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 TTC1Q99614 292 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 PHF20Q9BVI0 1012 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 FAM8A1Q9UBU6 413 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 CFAP73A6NFT4 308 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 PDHA1P08559 390 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 KLRK1P26718 216 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 TFAMQ00059 246 aaKnown RBP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 SNX25Q9H3E2 840 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 CAPN11Q9UMQ6 739 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 MARF1Q9Y4F3 1742 aaKnown RBP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 POTEMA6NI47 508 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 RPS12P25398 132 aaKnown RBP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 KRT76Q01546 638 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 KRT39Q6A163 491 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 TTC25Q96NG3 672 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 LRRC37BQ96QE4 947 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 RPS6KC1Q96S38 1066 aa13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 PDS5AQ29RF7 1337 aaKnown RBP13.09□□□□□ -0.31
NPLOC4-202ENST00000374747 KRT38O76015 456 aa13.08□□□□□ -0.31
NPLOC4-202ENST00000374747 ACTN3Q08043 901 aaPredicted RBP13.08□□□□□ -0.31
NPLOC4-202ENST00000374747 MTERF2Q49AM1 385 aa13.08□□□□□ -0.31
NPLOC4-202ENST00000374747 TAF1BQ53T94 588 aaPredicted RBP13.08□□□□□ -0.31
NPLOC4-202ENST00000374747 C16orf87Q6PH81 154 aa13.08□□□□□ -0.31
NPLOC4-202ENST00000374747 GDAQ9Y2T3 454 aa13.08□□□□□ -0.31
NPLOC4-202ENST00000374747 IQCA1LA6NCM1 817 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 WDR64B1ANS9 1081 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 INO80B-WBP1J3KQ70 363 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 PSMD14O00487 310 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 SMARCA1P28370 1054 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 PMS2P54278 862 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 GSPT2Q8IYD1 628 aaKnown RBP13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 LPAR1Q92633 364 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 RAD54LQ92698 747 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 FAM193BQ96PV7 902 aaPredicted RBP13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 INO80BQ9C086 356 aaPredicted RBP13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 GRID2IPA4D2P6 1211 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 AGBL3Q8NEM8 1001 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 DHX38Q92620 1227 aaKnown RBP13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 KLC2Q9H0B6 622 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 NXF1Q9UBU9 619 aaKnown RBP13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 TMEM259Q4ZIN3 620 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 BZW1Q7L1Q6 419 aaKnown RBP13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 ARHGAP18Q8N392 663 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 FAF2Q96CS3 445 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 MXD3Q9BW11 206 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 COPB2P35606 906 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 AP2B1P63010 937 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 KLHL38Q2WGJ6 581 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 TEDDM1Q5T9Z0 273 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 RBM41Q96IZ5 413 aaKnown RBP13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 ATP6V1G3Q96LB4 118 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 MRPL40Q9NQ50 206 aaKnown RBP13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 WARS2Q9UGM6 360 aaKnown RBP13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 SUN2Q9UH99 717 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 AKT3Q9Y243 479 aa13.08□□□□□ -0.32
NPLOC4-202ENST00000374747 LTN1O94822 1766 aa13.07□□□□□ -0.32
NPLOC4-202ENST00000374747 SPDYE2BA6NHP3 402 aa13.07□□□□□ -0.32
NPLOC4-202ENST00000374747 SPDYE6P0CI01 402 aa13.07□□□□□ -0.32
NPLOC4-202ENST00000374747 TAC1P20366 129 aa13.07□□□□□ -0.32
NPLOC4-202ENST00000374747 MYO1EQ12965 1108 aa13.07□□□□□ -0.32
NPLOC4-202ENST00000374747 EEPD1Q7L9B9 569 aa13.07□□□□□ -0.32
NPLOC4-202ENST00000374747 OLFM3Q96PB7 478 aa13.07□□□□□ -0.32
NPLOC4-202ENST00000374747 OSBPL9Q96SU4 736 aa13.07□□□□□ -0.32
NPLOC4-202ENST00000374747 SUCLA2Q9P2R7 463 aaPredicted RBP13.07□□□□□ -0.32
NPLOC4-202ENST00000374747 POLLQ9UGP5 575 aa13.07□□□□□ -0.32
NPLOC4-202ENST00000374747 MED1Q15648 1581 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms