RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 PHF19Q5T6S3 580 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 CCDC30Q5VVM6 783 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 BTBD8Q5XKL5 378 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 CPZQ66K79 652 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 RALYLQ86SE5 291 aaKnown RBP5.81□□□□□ -1.48
USP48-202ENST00000374730 HSCBQ8IWL3 235 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 STPG3Q8N7X2 389 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 GSTCDQ8NEC7 633 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 GPR20Q99678 358 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 MEIS3Q99687 375 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 STK31Q9BXU1 1019 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 CBLCQ9ULV8 474 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 ATP23Q9Y6H3 246 aa5.81□□□□□ -1.48
USP48-202ENST00000374730 COL18A1P39060 1754 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 FAM90A27PA6NNH2 459 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 C1QTNF3-AMACRE9PGA6 284 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 H0Y858 1186 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 CRTAMO95727 393 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 IL18BPO95998 194 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 APPP05067 770 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 GLRBP48167 497 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 ST5P78524 1137 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 LACTBP83111 547 aaPredicted RBP5.8□□□□□ -1.48
USP48-202ENST00000374730 TAF7Q15545 349 aaPredicted RBP5.8□□□□□ -1.48
USP48-202ENST00000374730 CRY1Q16526 586 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 SLFN13Q68D06 897 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 G2E3Q7L622 706 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 GGNQ86UU5 652 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 PTRH1Q86Y79 214 aaKnown RBP5.8□□□□□ -1.48
USP48-202ENST00000374730 ZC3H7AQ8IWR0 971 aaKnown RBP5.8□□□□□ -1.48
USP48-202ENST00000374730 ZSWIM2Q8NEG5 633 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 IL17REQ8NFR9 667 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 C8orf49Q96NF6 230 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 SRPK1Q96SB4 655 aaKnown RBP5.8□□□□□ -1.48
USP48-202ENST00000374730 CHMP4AQ9BY43 222 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 KRTAP4-5Q9BYR2 181 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 KATNBL1Q9H079 304 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 SLKQ9H2G2 1235 aaPredicted RBP5.8□□□□□ -1.48
USP48-202ENST00000374730 RIC8BQ9NVN3 520 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 CHMP5Q9NZZ3 219 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 ZDHHC9Q9Y397 364 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 PCDHA9Q9Y5H5 950 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 DCCP43146 1447 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 STRCP1A6NGW2 1772 aa5.8□□□□□ -1.48
USP48-202ENST00000374730 PKD1L3Q7Z443 1732 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 PARP4Q9UKK3 1724 aaKnown RBP5.79□□□□□ -1.48
USP48-202ENST00000374730 C1orf167Q5SNV9 1468 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 PXDNQ92626 1479 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 CCDC66A2RUB6 948 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 NPEPPSL1A6NEC2 478 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 CUTAO60888 179 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 CLASP2O75122 1294 aaKnown RBP5.79□□□□□ -1.48
USP48-202ENST00000374730 GNAI2P04899 355 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 GNAI3P08754 354 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 SRGAP2CP0DJJ0 459 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 ZNF20P17024 532 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 CSF2RBP32927 897 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 DDIT3P35638 169 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 HERVK_113P62684 666 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 DPP8Q6V1X1 898 aaPredicted RBP5.79□□□□□ -1.48
USP48-202ENST00000374730 EP400NLQ6ZTU2 488 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 LIMS2Q7Z4I7 341 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 OSTM1Q86WC4 334 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 CIR1Q86X95 450 aaPredicted RBP5.79□□□□□ -1.48
USP48-202ENST00000374730 CHST13Q8NET6 341 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 DNAJC7Q99615 494 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 TACO1Q9BSH4 297 aaKnown RBP5.79□□□□□ -1.48
USP48-202ENST00000374730 MEGF9Q9H1U4 602 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 SEC61A2Q9H9S3 476 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 SLC52A2Q9HAB3 445 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 SMURF1Q9HCE7 757 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 SLC39A2Q9NP94 309 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 MIS18AQ9NYP9 233 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 ARHGAP28Q9P2N2 729 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 SLC4A7Q9Y6M7 1214 aa5.79□□□□□ -1.48
USP48-202ENST00000374730 SALL3Q9BXA9 1300 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 LAMB4A4D0S4 1761 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.78□□□□□ -1.48
USP48-202ENST00000374730 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.78□□□□□ -1.48
USP48-202ENST00000374730 GPR42O15529 346 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 KCNQ2O43526 872 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 B4GALT4O60513 344 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 AOAHP28039 575 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 JAM2P57087 298 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 RABEP1Q15276 862 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 AMOTQ4VCS5 1084 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 ARHGEF25Q86VW2 580 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 IFNL2Q8IZJ0 200 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 DNERQ8NFT8 737 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 THAP3Q8WTV1 239 aaPredicted RBP5.78□□□□□ -1.48
USP48-202ENST00000374730 DVL3Q92997 716 aaPredicted RBP5.78□□□□□ -1.48
USP48-202ENST00000374730 MRPL4Q9BYD3 311 aaKnown RBP5.78□□□□□ -1.48
USP48-202ENST00000374730 CELF4Q9BZC1 486 aaKnown RBP5.78□□□□□ -1.48
USP48-202ENST00000374730 NDOR1Q9UHB4 597 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 C5P01031 1676 aa5.78□□□□□ -1.48
USP48-202ENST00000374730 IBTKQ9P2D0 1353 aaPredicted RBP5.78□□□□□ -1.48
USP48-202ENST00000374730 MRC1P22897 1456 aa5.77□□□□□ -1.49
USP48-202ENST00000374730 AOX1Q06278 1338 aa5.77□□□□□ -1.49
USP48-202ENST00000374730 XIRP1Q702N8 1843 aaKnown RBP5.77□□□□□ -1.49
USP48-202ENST00000374730 CNOT4O95628 575 aaKnown RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms