RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TMEM260Q9NX78 707 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 EHD2Q9NZN4 543 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 DLGAP2Q9P1A6 1054 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 ADAMTS13Q76LX8 1427 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L15C9J2P7 530 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L13C9JLJ4 530 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L11C9JVI0 530 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L18D6R9N7 530 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L22D6RA61 530 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L17D6RBQ6 530 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L19D6RCP7 530 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L20D6RJB6 530 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 PYGBP11216 843 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 IGBP1P78318 339 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 MRPS35P82673 323 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L24Q0WX57 530 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 TAF1BQ53T94 588 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 SYDE2Q5VT97 1194 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L6PQ6QN14 398 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 HACE1Q8IYU2 909 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 FDPSP14324 419 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 NT5C2P49902 561 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 C9orf72Q96LT7 481 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 ADA2Q9NZK5 511 aa20.78■□□□□ 0.92
CCDC88B-202ENST00000356786 POTEFA5A3E0 1075 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 POTEIP0CG38 1075 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 SOX5P35711 763 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 OSTNP61366 133 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 HIC1Q14526 733 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 MORF4L2Q15014 288 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 KRT39Q6A163 491 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 POTEGQ6S5H5 508 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 POTEEQ6S8J3 1075 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 HEY1Q9Y5J3 304 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 GOLGA8RI6L899 631 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 ABL1P00519 1130 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 MTERF2Q49AM1 385 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 RARS2Q5T160 578 aaKnown RBP20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 RYBPQ8N488 228 aaPredicted RBP20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 CCSER1Q9C0I3 900 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 GEMIN8Q9NWZ8 242 aaKnown RBP20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 KIAA1210Q9ULL0 1709 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 PITPNM2Q9BZ72 1349 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 USP17L5A8MUK1 530 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 ZNF18P17022 549 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 STK4Q13043 487 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 RNF169Q8NCN4 708 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 PPME1Q9Y570 386 aa20.77■□□□□ 0.92
CCDC88B-202ENST00000356786 USP42Q9H9J4 1324 aaKnown RBP20.77■□□□□ 0.91
CCDC88B-202ENST00000356786 GALCP54803 685 aa20.77■□□□□ 0.91
CCDC88B-202ENST00000356786 SCARF1Q14162 830 aa20.77■□□□□ 0.91
CCDC88B-202ENST00000356786 C4orf50Q6ZRC1 276 aa20.77■□□□□ 0.91
CCDC88B-202ENST00000356786 ZBTB33Q86T24 672 aa20.77■□□□□ 0.91
CCDC88B-202ENST00000356786 MDM1Q8TC05 714 aa20.77■□□□□ 0.91
CCDC88B-202ENST00000356786 BARHL2Q9NY43 387 aa20.77■□□□□ 0.91
CCDC88B-202ENST00000356786 ZC3H13Q5T200 1668 aaKnown RBP20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 TMEM120BA0PK00 339 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 KPNA7A9QM74 516 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 KIF19Q2TAC6 998 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 RHOT1Q8IXI2 618 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 SKA2Q8WVK7 121 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 PAGR1Q9BTK6 254 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 POLR3CQ9BUI4 534 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 NPHS2Q9NP85 383 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 IQGAP1P46940 1657 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 MYO3AQ8NEV4 1616 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 SERPINB4P48594 390 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 TMEM270Q6UE05 265 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 TEX9Q8N6V9 391 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 ARL8AQ96BM9 186 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 DTNBP1Q96EV8 351 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 TRIM15Q9C019 465 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 K7ERI5 159 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 TFDP1Q14186 410 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 CYTH1Q15438 398 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 FAM160B1Q5W0V3 765 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 TRIM33Q9UPN9 1127 aa20.76■□□□□ 0.91
CCDC88B-202ENST00000356786 TDP2O95551 362 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 OATP04181 439 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 ENO1P06733 434 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 ATICP31939 592 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 COPS2P61201 443 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 ERFEQ4G0M1 354 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 ISCUQ9H1K1 167 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 SMG5Q9UPR3 1016 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 AP3B2Q13367 1082 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 CRYMQ14894 314 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 PRPF31Q8WWY3 499 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 CACYBPQ9HB71 228 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 ATL2Q8NHH9 583 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 VPS39Q96JC1 886 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 CEP19Q96LK0 163 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 HEXIM2Q96MH2 286 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 SPC25Q9HBM1 224 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 CPS1P31327 1500 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 ADGRB1O14514 1584 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 RHOBTB3O94955 611 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 CTDNEP1O95476 244 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 S100BP04271 92 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 PRDX5P30044 214 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms