RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 PYCARDQ9ULZ3 195 aa9.13□□□□□ -0.95
CD44-205ENST00000352818 MRPL42Q9Y6G3 142 aaKnown RBP9.13□□□□□ -0.95
CD44-205ENST00000352818 CACNA1IQ9P0X4 2223 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 EMSYQ7Z589 1322 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 CYP3A7-CYP3A51PA0A087WV96 503 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 KRBA1A5PL33 1030 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 RSPH10B2B2RC85 870 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 PPP1R3GB7ZBB8 358 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 EDIL3O43854 480 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 RHOBTB3O94955 611 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 RPN1P04843 607 aaKnown RBP9.12□□□□□ -0.95
CD44-205ENST00000352818 RSPH10BP0C881 870 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 BMP3P12645 472 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 ATP1A3P13637 1013 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 CYP3A7P24462 503 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 SLC16A2P36021 539 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 PPP1R2P41236 205 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 USP11P51784 963 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 UBASH3AP57075 661 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 PDIA5Q14554 519 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 CALCRLQ16602 461 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 TMEM266Q2M3C6 531 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 SOWAHCQ53LP3 525 aaPredicted RBP9.12□□□□□ -0.95
CD44-205ENST00000352818 N4BP2L1Q5TBK1 243 aaPredicted RBP9.12□□□□□ -0.95
CD44-205ENST00000352818 CDKAL1Q5VV42 579 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 CNNM4Q6P4Q7 775 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 VSTM4Q8IW00 320 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 AFG1LQ8WV93 481 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 PPP2R3CQ969Q6 453 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 AMNQ9BXJ7 453 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 PSTPIP2Q9H939 334 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 FANCLQ9NW38 375 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 NCDNQ9UBB6 729 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 RWDD3Q9Y3V2 267 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 NR2E1Q9Y466 385 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 NFE2L3Q9Y4A8 694 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 AKAP13Q12802 2813 aa9.12□□□□□ -0.95
CD44-205ENST00000352818 A0A1B0GTH6 734 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 SLC37A4O43826 429 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 KLRC4O43908 158 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 SERPINC1P01008 464 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 FOSP01100 380 aaPredicted RBP9.11□□□□□ -0.95
CD44-205ENST00000352818 MMP3P08254 477 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 GLULP15104 373 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 CD44P16070 742 aaKnown RBP9.11□□□□□ -0.95
CD44-205ENST00000352818 CCZ1BP86790 482 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 CCZ1P86791 482 aaPredicted RBP9.11□□□□□ -0.95
CD44-205ENST00000352818 AMPD3Q01432 767 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 SPAG1Q07617 926 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 LRMPQ12912 555 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 UBE2SQ16763 222 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 TMEM119Q4V9L6 283 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 HYIQ5T013 277 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 ZC3H14Q6PJT7 736 aaKnown RBP9.11□□□□□ -0.95
CD44-205ENST00000352818 TMC6Q7Z403 805 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 ZDHHC14Q8IZN3 488 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 GPR161Q8N6U8 529 aaKnown RBP9.11□□□□□ -0.95
CD44-205ENST00000352818 CCDC112Q8NEF3 446 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 CRYGNQ8WXF5 182 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 CALML4Q96GE6 196 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 MED15Q96RN5 788 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 C7orf25Q9BPX7 421 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 MMTAG2Q9BU76 263 aaKnown RBP9.11□□□□□ -0.95
CD44-205ENST00000352818 TMEM121BQ9BXQ6 578 aaPredicted RBP9.11□□□□□ -0.95
CD44-205ENST00000352818 ANO3Q9BYT9 981 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 RWDD2AQ9UIY3 292 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 LHX6Q9UPM6 363 aa9.11□□□□□ -0.95
CD44-205ENST00000352818 FREM2Q5SZK8 3169 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 KDM3AQ9Y4C1 1321 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 SRRM3A6NNA2 597 aaPredicted RBP9.1□□□□□ -0.95
CD44-205ENST00000352818 PP2D1A8MPX8 630 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 HAS3O00219 553 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 PIK3CDO00329 1044 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 MEIS2O14770 477 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 TBX3O15119 743 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 NRDCO43847 1150 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 TDP2O95551 362 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 DCNP07585 359 aaKnown RBP9.1□□□□□ -0.95
CD44-205ENST00000352818 PLCG1P19174 1290 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 SFPQP23246 707 aaKnown RBP eCLIP9.1□□□□□ -0.95
CD44-205ENST00000352818 THPOP40225 353 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 TECP42680 631 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 ALDH5A1P51649 535 aaPredicted RBP9.1□□□□□ -0.95
CD44-205ENST00000352818 ERVFC1P60507 584 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 PAK1Q13153 545 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 TBX2Q13207 712 aaPredicted RBP9.1□□□□□ -0.95
CD44-205ENST00000352818 FILIP1Q7Z7B0 1213 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 FAM160B2Q86V87 743 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 SERINC5Q86VE9 423 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 C1orf210Q8IVY1 113 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 RASSF8Q8NHQ8 419 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 SEPT8Q92599 483 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 CCDC47Q96A33 483 aaKnown RBP9.1□□□□□ -0.95
CD44-205ENST00000352818 PRIMPOLQ96LW4 560 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 TRERF1Q96PN7 1200 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 TRIM9Q9C026 710 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 LRRC27Q9C0I9 530 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 INTS13Q9NVM9 706 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 LRWD1Q9UFC0 647 aa9.1□□□□□ -0.95
CD44-205ENST00000352818 DDX25Q9UHL0 483 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms