RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 MOB2Q70IA6 237 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 CCNJLQ8IV13 435 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 ADSSL1Q8N142 457 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 SMYD1Q8NB12 490 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 STK32AQ8WU08 396 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 NELFBQ8WX92 580 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 BRI3BPQ8WY22 251 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 SYMPKQ92797 1274 aaKnown RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 CLMNQ96JQ2 1002 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 RMDN2Q96LZ7 410 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 P2RX7Q99572 595 aaKnown RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 RANBP17Q9H2T7 1088 aaKnown RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 FOXP1Q9H334 677 aaPredicted RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 INIPQ9NRY2 104 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 DLGAP2Q9P1A6 1054 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 LRP2BPQ9P2M1 347 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 TUBGCP4Q9UGJ1 667 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 SWAP70Q9UH65 585 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 MBD4O95243 580 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 AFPP02771 609 aaKnown RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 GSTT1P30711 240 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 CTNNA1P35221 906 aaKnown RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 SPAG1Q07617 926 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 KLC1Q07866 573 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 PARP6Q2NL67 630 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 ZNF568Q3ZCX4 644 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 CFAP221Q4G0U5 840 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 ZNF658Q5TYW1 1059 aaPredicted RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 C12orf60Q5U649 245 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 ANGEL2Q5VTE6 544 aaKnown RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 TRIM68Q6AZZ1 485 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 IRGCQ6NXR0 463 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 TTI2Q6NXR4 508 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 TSHZ1Q6ZSZ6 1077 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 WNK4Q96J92 1243 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 ELAC2Q9BQ52 826 aaKnown RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 ANGEL1Q9UNK9 670 aaKnown RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 FZD1Q9UP38 647 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 SIK3Q9Y2K2 1263 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 GDAQ9Y2T3 454 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 BZW2Q9Y6E2 419 aaKnown RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 G3V3G9 751 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 KLRC4O43908 158 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 TACC1O75410 805 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 MMEP08473 750 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 NUDT17P0C025 328 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 FUT4P22083 530 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 KIF11P52732 1056 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 VGLL4Q14135 290 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 GPR162Q16538 588 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 SPDYCQ5MJ68 293 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 DCAF8Q5TAQ9 597 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 RUFY4Q6ZNE9 571 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 MIGA2Q7L4E1 593 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 LCA5Q86VQ0 697 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 LRRC15Q8TF66 581 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 BAP1Q92560 729 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 PGM2Q96G03 612 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 ERGIC2Q96RQ1 377 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 PRMT1Q99873 361 aaKnown RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 KRT23Q9C075 422 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 TMEM39BQ9GZU3 492 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 DCP1AQ9NPI6 582 aaPredicted RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 PLXNA3P51805 1871 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 H7C1D1 291 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 T-ENOLP0DO92 83 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 PTPRAP18433 802 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 VARSP26640 1264 aaKnown RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 EEF1GP26641 437 aaKnown RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 CUL1Q13616 776 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 RILPL1Q5EBL4 403 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 SGMS1Q86VZ5 419 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 NIM1KQ8IY84 436 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 RETREG2Q8NC44 543 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 STAMQ92783 540 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 SLC7A6OSQ96CW6 309 aaPredicted RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 IFIH1Q9BYX4 1025 aaKnown RBP6.04□□□□□ -1.44
CSDE1-202ENST00000339438 BLZF1Q9H2G9 400 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 RMI1Q9H9A7 625 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 LY9Q9HBG7 655 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 EMILIN3Q9NT22 766 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 ZDHHC18Q9NUE0 388 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 GGA3Q9NZ52 723 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 SLC4A7Q9Y6M7 1214 aa6.04□□□□□ -1.44
CSDE1-202ENST00000339438 CES2O00748 559 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 CREB3O43889 395 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 UNC5CO95185 931 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 GIT2Q14161 759 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 NPY5RQ15761 445 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 CNGA2Q16280 664 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 MAP1SQ66K74 1059 aaPredicted RBP6.03□□□□□ -1.44
CSDE1-202ENST00000339438 TBC1D10CQ8IV04 446 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 LCORLQ8N3X6 602 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 FAM13CQ8NE31 585 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 SH3TC2Q8TF17 1288 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 TNFRSF25Q93038 417 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 SPATA16Q9BXB7 569 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 RXFP1Q9HBX9 757 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 NMRK1Q9NWW6 199 aa6.03□□□□□ -1.44
CSDE1-202ENST00000339438 DDX43Q9NXZ2 648 aaKnown RBP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms