RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 USP20Q9Y2K6 914 aa24.38■■□□□ 1.49
SDC3-202ENST00000339394 GDAQ9Y2T3 454 aa24.38■■□□□ 1.49
SDC3-202ENST00000339394 EDN1P05305 212 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 ABCD1P33897 745 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 KCNA1Q09470 495 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 STRN3Q13033 797 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 PLEKHG4Q58EX7 1191 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 PPP4R3CPQ6ZMV5 832 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 DBF4BQ8NFT6 615 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 SCFD1Q8WVM8 642 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 PRIMPOLQ96LW4 560 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 ERVK-5Q9HDB9 667 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 TTLL13PA6NNM8 815 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 B4GALT5O43286 388 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 TSPAN1O60635 241 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 ERLIN2O94905 339 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 PRPF6O94906 941 aaKnown RBP24.37■■□□□ 1.49
SDC3-202ENST00000339394 BMP6P22004 513 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 ALCAMQ13740 583 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 MORC3Q14149 939 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 ZNF658Q5TYW1 1059 aaPredicted RBP24.37■■□□□ 1.49
SDC3-202ENST00000339394 STXBP4Q6ZWJ1 553 aa24.37■■□□□ 1.49
SDC3-202ENST00000339394 SMYD4Q8IYR2 804 aaPredicted RBP24.37■■□□□ 1.49
SDC3-202ENST00000339394 EIF3DO15371 548 aaKnown RBP eCLIP24.36■■□□□ 1.49
SDC3-202ENST00000339394 HOXA11P31270 313 aaPredicted RBP24.36■■□□□ 1.49
SDC3-202ENST00000339394 PRPF4BQ13523 1007 aaKnown RBP24.36■■□□□ 1.49
SDC3-202ENST00000339394 L1TD1Q5T7N2 865 aaKnown RBP24.36■■□□□ 1.49
SDC3-202ENST00000339394 MAP4K3Q8IVH8 894 aa24.36■■□□□ 1.49
SDC3-202ENST00000339394 ZNF507Q8TCN5 953 aa24.36■■□□□ 1.49
SDC3-202ENST00000339394 HVCN1Q96D96 273 aa24.36■■□□□ 1.49
SDC3-202ENST00000339394 AGPAT5Q9NUQ2 364 aa24.36■■□□□ 1.49
SDC3-202ENST00000339394 ARF4P18085 180 aaPredicted RBP24.35■■□□□ 1.49
SDC3-202ENST00000339394 FPGSQ05932 587 aa24.35■■□□□ 1.49
SDC3-202ENST00000339394 NCBP1Q09161 790 aaKnown RBP24.35■■□□□ 1.49
SDC3-202ENST00000339394 RPUSD2Q8IZ73 545 aaKnown RBP24.35■■□□□ 1.49
SDC3-202ENST00000339394 TRIML1Q8N9V2 468 aa24.35■■□□□ 1.49
SDC3-202ENST00000339394 SEPT8Q92599 483 aa24.35■■□□□ 1.49
SDC3-202ENST00000339394 MRPL4Q9BYD3 311 aaKnown RBP24.35■■□□□ 1.49
SDC3-202ENST00000339394 TMX1Q9H3N1 280 aa24.35■■□□□ 1.49
SDC3-202ENST00000339394 MAPK8IP1Q9UQF2 711 aa24.35■■□□□ 1.49
SDC3-202ENST00000339394 CNTNAP2Q9UHC6 1331 aa24.34■■□□□ 1.49
SDC3-202ENST00000339394 ACRP10323 421 aa24.34■■□□□ 1.49
SDC3-202ENST00000339394 HOXD13P35453 343 aa24.34■■□□□ 1.49
SDC3-202ENST00000339394 CPB2Q96IY4 423 aa24.34■■□□□ 1.49
SDC3-202ENST00000339394 ACCSQ96QU6 501 aa24.34■■□□□ 1.49
SDC3-202ENST00000339394 LBHD1Q9BQE6 289 aaPredicted RBP24.34■■□□□ 1.49
SDC3-202ENST00000339394 TARS2Q9BW92 718 aaKnown RBP24.34■■□□□ 1.49
SDC3-202ENST00000339394 IL23AQ9NPF7 189 aa24.34■■□□□ 1.49
SDC3-202ENST00000339394 PIN4Q9Y237 131 aaKnown RBP24.34■■□□□ 1.49
SDC3-202ENST00000339394 TNRC18O15417 2968 aaPredicted RBP24.34■■□□□ 1.49
SDC3-202ENST00000339394 PPIGQ13427 754 aaKnown RBP eCLIP24.33■■□□□ 1.49
SDC3-202ENST00000339394 BMT2Q1RMZ1 405 aa24.33■■□□□ 1.49
SDC3-202ENST00000339394 TCTN1Q2MV58 587 aa24.33■■□□□ 1.49
SDC3-202ENST00000339394 MYOCDQ8IZQ8 938 aa24.33■■□□□ 1.49
SDC3-202ENST00000339394 APBB2Q92870 758 aa24.33■■□□□ 1.49
SDC3-202ENST00000339394 ACO2Q99798 780 aaKnown RBP24.33■■□□□ 1.49
SDC3-202ENST00000339394 GTPBP4Q9BZE4 634 aaKnown RBP24.33■■□□□ 1.49
SDC3-202ENST00000339394 IKZF4Q9H2S9 585 aa24.33■■□□□ 1.49
SDC3-202ENST00000339394 TMEM206Q9H813 350 aa24.33■■□□□ 1.49
SDC3-202ENST00000339394 A0A1B0GUA9 196 aa24.33■■□□□ 1.48
SDC3-202ENST00000339394 PFKMP08237 780 aa24.33■■□□□ 1.48
SDC3-202ENST00000339394 AXLP30530 894 aa24.33■■□□□ 1.48
SDC3-202ENST00000339394 C16orf59Q7L2K0 433 aa24.33■■□□□ 1.48
SDC3-202ENST00000339394 NELFCDQ8IXH7 590 aa24.33■■□□□ 1.48
SDC3-202ENST00000339394 BICD1Q96G01 975 aa24.33■■□□□ 1.48
SDC3-202ENST00000339394 CHST12Q9NRB3 414 aa24.33■■□□□ 1.48
SDC3-202ENST00000339394 SIP14410 1827 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 HNRNPDLO14979 420 aaKnown RBP24.32■■□□□ 1.48
SDC3-202ENST00000339394 MGEA5O60502 916 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 PRCPP42785 496 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 EPHB4P54760 987 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 ATF7IP2Q5U623 682 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 NOTUMQ6P988 496 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 CNKSR3Q6P9H4 555 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 ZPBP2Q6X784 338 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 CDR2LQ86X02 465 aaPredicted RBP24.32■■□□□ 1.48
SDC3-202ENST00000339394 SYCP3Q8IZU3 236 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 GUF1Q8N442 669 aaKnown RBP24.32■■□□□ 1.48
SDC3-202ENST00000339394 FTHL17Q9BXU8 183 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 EXOC7Q9UPT5 735 aa24.32■■□□□ 1.48
SDC3-202ENST00000339394 UBE4BO95155 1302 aa24.31■■□□□ 1.48
SDC3-202ENST00000339394 MYH11P35749 1972 aa24.31■■□□□ 1.48
SDC3-202ENST00000339394 KIF20AO95235 890 aa24.31■■□□□ 1.48
SDC3-202ENST00000339394 PIGRP01833 764 aa24.31■■□□□ 1.48
SDC3-202ENST00000339394 ZSCAN20P17040 1043 aaPredicted RBP24.31■■□□□ 1.48
SDC3-202ENST00000339394 KNOP1Q1ED39 458 aaKnown RBP24.31■■□□□ 1.48
SDC3-202ENST00000339394 TMEM132AQ24JP5 1023 aa24.31■■□□□ 1.48
SDC3-202ENST00000339394 COBLL1Q53SF7 1204 aa24.31■■□□□ 1.48
SDC3-202ENST00000339394 TNFSF13BQ9Y275 285 aa24.31■■□□□ 1.48
SDC3-202ENST00000339394 TANC1Q9C0D5 1861 aa24.31■■□□□ 1.48
SDC3-202ENST00000339394 LIG4P49917 911 aa24.3■■□□□ 1.48
SDC3-202ENST00000339394 DSC3Q14574 896 aa24.3■■□□□ 1.48
SDC3-202ENST00000339394 SLC39A4Q6P5W5 647 aa24.3■■□□□ 1.48
SDC3-202ENST00000339394 RTN4RL1Q86UN2 441 aaPredicted RBP24.3■■□□□ 1.48
SDC3-202ENST00000339394 ADAM2Q99965 735 aa24.3■■□□□ 1.48
SDC3-202ENST00000339394 PDZD7Q9H5P4 517 aa24.3■■□□□ 1.48
SDC3-202ENST00000339394 PTPRHQ9HD43 1115 aa24.3■■□□□ 1.48
SDC3-202ENST00000339394 H0YGN5 161 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 TOM1L1O75674 476 aa24.29■■□□□ 1.48
SDC3-202ENST00000339394 LETM1O95202 739 aaPredicted RBP24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms