RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 Q3C1V9 767 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 SPOUT1Q5T280 376 aaKnown RBP7.38□□□□□ -1.23
SF3B1-201ENST00000335508 DSTYKQ6XUX3 929 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ERICH1Q86X53 443 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 NT5DC4Q86YG4 428 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 SIX6OS1Q8N1H7 587 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 CCHCR1Q8TD31 782 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ACAP3Q96P50 834 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 TMEM106CQ9BVX2 250 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 SLC12A6Q9UHW9 1150 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 FOXN1O15353 648 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 PTGER2P43116 358 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 EHHADHQ08426 723 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 RBL2Q08999 1139 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 PGM5Q15124 567 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 PPP1R21Q6ZMI0 780 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ZNF720Q7Z2F6 126 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 TRIM59Q8IWR1 403 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ZCCHC17Q9NP64 241 aaKnown RBP7.38□□□□□ -1.23
SF3B1-201ENST00000335508 HSPBP1Q9NZL4 362 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 FAM169AQ9Y6X4 670 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 V9GYY5 206 aaPredicted RBP7.38□□□□□ -1.23
SF3B1-201ENST00000335508 RIF1Q5UIP0 2472 aaKnown RBP7.38□□□□□ -1.23
SF3B1-201ENST00000335508 TRIM49BA6NDI0 452 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 APC2O95996 2303 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 ITGB5P18084 799 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TCF7P36402 384 aaPredicted RBP7.37□□□□□ -1.23
SF3B1-201ENST00000335508 ARL4AP40617 200 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 EMSYQ7Z589 1322 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.37□□□□□ -1.23
SF3B1-201ENST00000335508 RFFLQ8WZ73 363 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 APOL6Q9BWW8 343 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 SEZ6LQ9BYH1 1024 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 NIF3L1Q9GZT8 377 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 SPTLC3Q9NUV7 552 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 ACKR2O00590 384 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 KCNK3O14649 394 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 UCHL3P15374 230 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 DEFB115Q30KQ5 88 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 NOTUMQ6P988 496 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TAOK1Q7L7X3 1001 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 HDXQ7Z353 690 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 FAM133AQ8N9E0 248 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TSC1Q92574 1164 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 ABHD10Q9NUJ1 306 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 SSX2IPQ9Y2D8 614 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 UTP11Q9Y3A2 253 aaKnown RBP7.37□□□□□ -1.23
SF3B1-201ENST00000335508 FAM208AQ9UK61 1670 aaKnown RBP7.37□□□□□ -1.23
SF3B1-201ENST00000335508 LTBP4Q8N2S1 1624 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 NFASCO94856 1347 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 A0A087WWV3 80 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TYW5A2RUC4 315 aaKnown RBP7.37□□□□□ -1.23
SF3B1-201ENST00000335508 ADCY3O60266 1144 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TRIM49P0CI25 452 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TRIM49CP0CI26 452 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 GTF2H1P32780 548 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TSPY1Q01534 308 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 SH3D19Q5HYK7 790 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 CDKAL1Q5VV42 579 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TRPM4Q8TD43 1214 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 RBM41Q96IZ5 413 aaKnown RBP7.37□□□□□ -1.23
SF3B1-201ENST00000335508 CAPZA3Q96KX2 299 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TMEM8AQ9HCN3 771 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 SYNGAP1Q96PV0 1343 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 CYP2C19P33261 490 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 DRAP1Q14919 205 aaPredicted RBP7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TRAPPC11Q7Z392 1133 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 SRGAP1Q7Z6B7 1085 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TRIM50Q86XT4 487 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 ZNF677Q86XU0 584 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 L3MBTL3Q96JM7 780 aaPredicted RBP7.37□□□□□ -1.23
SF3B1-201ENST00000335508 ATP8B1O43520 1251 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 MYL3P08590 195 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 GZMAP12544 262 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 SDC4P31431 198 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 CA8P35219 290 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 TAP1Q03518 808 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 GRIN1Q05586 938 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 SLC18A3Q16572 532 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 FAM43BQ6ZT52 329 aaPredicted RBP7.37□□□□□ -1.23
SF3B1-201ENST00000335508 SLC9A9Q8IVB4 645 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 BLOC1S4Q9NUP1 217 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 DDX41Q9UJV9 622 aaKnown RBP7.37□□□□□ -1.23
SF3B1-201ENST00000335508 GTF3C4Q9UKN8 822 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 PASKQ96RG2 1323 aa7.37□□□□□ -1.23
SF3B1-201ENST00000335508 GOLGA8IPA6NC78 632 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 GOLGA8JA6NMD2 632 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 FAM86B1E9PN63 330 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 ZBTB24O43167 697 aaPredicted RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 MED24O75448 989 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 KRT7P08729 469 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 FAM86B2P0C5J1 330 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 CYP2C8P10632 490 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 ALDH5A1P51649 535 aaPredicted RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 RWDD2BP57060 319 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 GPC5P78333 572 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 MAPRE1Q15691 268 aaKnown RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 SMYD5Q6GMV2 418 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 OR6B3Q8NGW1 331 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms