RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 SRGAP2BP0DMP2 458 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 NCLP19338 710 aaKnown RBP19.73■□□□□ 0.75
HDDC3-201ENST00000330334 ATP2B1P20020 1258 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 MUTP22033 750 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 U2AF2P26368 475 aaKnown RBP eCLIP19.73■□□□□ 0.75
HDDC3-201ENST00000330334 RPA1P27694 616 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 SMC1AQ14683 1233 aaKnown RBP19.73■□□□□ 0.75
HDDC3-201ENST00000330334 RABEP1Q15276 862 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 PLPP4Q5VZY2 271 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 VN1R2Q8NFZ6 395 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 PIGOQ8TEQ8 1089 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 TMEM169Q96HH4 297 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 CCDC43Q96MW1 224 aaKnown RBP19.73■□□□□ 0.75
HDDC3-201ENST00000330334 LRFN3Q9BTN0 628 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 NRDE2Q9H7Z3 1164 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 BARX2Q9UMQ3 279 aaPredicted RBP19.73■□□□□ 0.75
HDDC3-201ENST00000330334 IRAK3Q9Y616 596 aa19.73■□□□□ 0.75
HDDC3-201ENST00000330334 HIDE1A8MVS5 230 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 INPPL1O15357 1258 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 TSPAN1O60635 241 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 HOXB8P17481 243 aaPredicted RBP19.72■□□□□ 0.75
HDDC3-201ENST00000330334 GLRA2P23416 452 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 TECP42680 631 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 GIT2Q14161 759 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 ZNF174Q15697 407 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 NOTUMQ6P988 496 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 DDX53Q86TM3 631 aaKnown RBP19.72■□□□□ 0.75
HDDC3-201ENST00000330334 MCPH1Q8NEM0 835 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 ERMNQ8TAM6 284 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 URGCPQ8TCY9 931 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 ASAP3Q8TDY4 903 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 SUSD6Q92537 303 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 IGSF21Q96ID5 467 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 RSAD1Q9HA92 442 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 C11orf16Q9NQ32 467 aa19.72■□□□□ 0.75
HDDC3-201ENST00000330334 C2orf71A6NGG8 1288 aa19.71■□□□□ 0.75
HDDC3-201ENST00000330334 DCXO43602 365 aa19.71■□□□□ 0.75
HDDC3-201ENST00000330334 ZC3H11AO75152 810 aaKnown RBP eCLIP19.71■□□□□ 0.75
HDDC3-201ENST00000330334 MED24O75448 989 aa19.71■□□□□ 0.75
HDDC3-201ENST00000330334 RNASELQ05823 741 aaKnown RBP19.71■□□□□ 0.75
HDDC3-201ENST00000330334 MBTD1Q05BQ5 628 aa19.71■□□□□ 0.75
HDDC3-201ENST00000330334 CAPSQ13938 189 aa19.71■□□□□ 0.75
HDDC3-201ENST00000330334 AMHR2Q16671 573 aa19.71■□□□□ 0.75
HDDC3-201ENST00000330334 LONRF3Q496Y0 759 aa19.71■□□□□ 0.75
HDDC3-201ENST00000330334 TTC38Q5R3I4 469 aa19.71■□□□□ 0.75
HDDC3-201ENST00000330334 C4orf32Q8N8J7 132 aa19.71■□□□□ 0.75
HDDC3-201ENST00000330334 TMEM175Q9BSA9 504 aa19.71■□□□□ 0.75
HDDC3-201ENST00000330334 DAXXQ9UER7 740 aaPredicted RBP19.71■□□□□ 0.75
HDDC3-201ENST00000330334 NOL7Q9UMY1 257 aaKnown RBP19.71■□□□□ 0.75
HDDC3-201ENST00000330334 USP15Q9Y4E8 981 aaPredicted RBP19.71■□□□□ 0.75
HDDC3-201ENST00000330334 ARIH1Q9Y4X5 557 aaPredicted RBP19.71■□□□□ 0.75
HDDC3-201ENST00000330334 NT5C1B-RDH14C9J2C7 533 aa19.7■□□□□ 0.74
HDDC3-201ENST00000330334 INO80B-WBP1J3KQ70 363 aa19.7■□□□□ 0.74
HDDC3-201ENST00000330334 FXR2P51116 673 aaKnown RBP eCLIP19.7■□□□□ 0.74
HDDC3-201ENST00000330334 GNL2Q13823 731 aaKnown RBP19.7■□□□□ 0.74
HDDC3-201ENST00000330334 PDIA5Q14554 519 aa19.7■□□□□ 0.74
HDDC3-201ENST00000330334 ANKRD54Q6NXT1 300 aa19.7■□□□□ 0.74
HDDC3-201ENST00000330334 VPS52Q8N1B4 723 aa19.7■□□□□ 0.74
HDDC3-201ENST00000330334 SMG8Q8ND04 991 aaKnown RBP19.7■□□□□ 0.74
HDDC3-201ENST00000330334 CSRNP2Q9H175 543 aa19.7■□□□□ 0.74
HDDC3-201ENST00000330334 S1PR5Q9H228 398 aa19.7■□□□□ 0.74
HDDC3-201ENST00000330334 INPP5FQ9Y2H2 1132 aa19.7■□□□□ 0.74
HDDC3-201ENST00000330334 KIF3AQ9Y496 699 aa19.7■□□□□ 0.74
HDDC3-201ENST00000330334 STK24Q9Y6E0 443 aa19.7■□□□□ 0.74
HDDC3-201ENST00000330334 PRR33A8MZF0 331 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 ST18O60284 1047 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 CXCL14O95715 111 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 ALDH2P05091 517 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 CTSAP10619 480 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 ITGA4P13612 1032 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 RBM10P98175 930 aaKnown RBP19.69■□□□□ 0.74
HDDC3-201ENST00000330334 CBX2Q14781 532 aaPredicted RBP19.69■□□□□ 0.74
HDDC3-201ENST00000330334 TMEM173Q86WV6 379 aaPredicted RBP19.69■□□□□ 0.74
HDDC3-201ENST00000330334 ZNF280BQ86YH2 543 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 CASP10Q92851 521 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 PHF7Q9BWX1 381 aaPredicted RBP19.69■□□□□ 0.74
HDDC3-201ENST00000330334 ZBP1Q9H171 429 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 POLR3FQ9H1D9 316 aaPredicted RBP19.69■□□□□ 0.74
HDDC3-201ENST00000330334 IPPQ9Y573 584 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 ARID2Q68CP9 1835 aa19.69■□□□□ 0.74
HDDC3-201ENST00000330334 A0A087WWV3 80 aa19.68■□□□□ 0.74
HDDC3-201ENST00000330334 A0A1B0GUA9 196 aa19.68■□□□□ 0.74
HDDC3-201ENST00000330334 LOC730098B7Z3J9 87 aa19.68■□□□□ 0.74
HDDC3-201ENST00000330334 USO1O60763 962 aaKnown RBP19.68■□□□□ 0.74
HDDC3-201ENST00000330334 DDHD2O94830 711 aa19.68■□□□□ 0.74
HDDC3-201ENST00000330334 ARF4P18085 180 aaPredicted RBP19.68■□□□□ 0.74
HDDC3-201ENST00000330334 SLC11A1P49279 550 aa19.68■□□□□ 0.74
HDDC3-201ENST00000330334 HERC4Q5GLZ8 1057 aaPredicted RBP19.68■□□□□ 0.74
HDDC3-201ENST00000330334 HAUS3Q68CZ6 603 aa19.68■□□□□ 0.74
HDDC3-201ENST00000330334 SYCE2Q6PIF2 218 aa19.68■□□□□ 0.74
HDDC3-201ENST00000330334 PPP4R3CPQ6ZMV5 832 aa19.68■□□□□ 0.74
HDDC3-201ENST00000330334 PRIMPOLQ96LW4 560 aa19.68■□□□□ 0.74
HDDC3-201ENST00000330334 DNAJB4Q9UDY4 337 aa19.68■□□□□ 0.74
HDDC3-201ENST00000330334 TRIOO75962 3097 aa19.67■□□□□ 0.74
HDDC3-201ENST00000330334 LAD1O00515 517 aa19.67■□□□□ 0.74
HDDC3-201ENST00000330334 CLASP2O75122 1294 aaKnown RBP19.67■□□□□ 0.74
HDDC3-201ENST00000330334 CYP11B2P19099 503 aa19.67■□□□□ 0.74
HDDC3-201ENST00000330334 TOB1P50616 345 aaPredicted RBP19.67■□□□□ 0.74
HDDC3-201ENST00000330334 AFF1P51825 1210 aaKnown RBP19.67■□□□□ 0.74
HDDC3-201ENST00000330334 FAM187BQ17R55 369 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms