RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 CES2O00748 559 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 TBX3O15119 743 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 SPP2Q13103 211 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 EAPPQ56P03 285 aaPredicted RBP11.32□□□□□ -0.6
COL3A1-202ENST00000317840 PARP9Q8IXQ6 854 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 PRMT1Q99873 361 aaKnown RBP11.32□□□□□ -0.6
COL3A1-202ENST00000317840 AGPAT1Q99943 283 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 SEMA4AQ9H3S1 761 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 PARP2Q9UGN5 583 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 TBK1Q9UHD2 729 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 SYNGAP1Q96PV0 1343 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 SMTNP53814 917 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 DACT2Q5SW24 774 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 PALB2Q86YC2 1186 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 MRRFQ96E11 262 aaKnown RBP11.32□□□□□ -0.6
COL3A1-202ENST00000317840 PABPC3Q9H361 631 aaKnown RBP11.32□□□□□ -0.6
COL3A1-202ENST00000317840 AGPAT3Q9NRZ7 376 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 HOMER3Q9NSC5 361 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 INTUQ9ULD6 942 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 STK38LQ9Y2H1 464 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 SHANK3Q9BYB0 1731 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 ARAP2Q8WZ64 1704 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 PASKQ96RG2 1323 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 ANXA13P27216 316 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 GPC5P78333 572 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 MAPK7Q13164 816 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 STYK1Q6J9G0 422 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 CYB5D1Q6P9G0 228 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 RSBN1LQ6PCB5 846 aaPredicted RBP11.32□□□□□ -0.6
COL3A1-202ENST00000317840 ETNPPLQ8TBG4 499 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 PAGR1Q9BTK6 254 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 TMEM59LQ9UK28 342 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 ZNRF3Q9ULT6 936 aa11.32□□□□□ -0.6
COL3A1-202ENST00000317840 A0A1B0GUL6 1792 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 IGSF9BQ9UPX0 1349 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 A0A1W2PRG0 241 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 TGFB1I1O43294 461 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 EIF2AK2P19525 551 aaKnown RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 MXI1P50539 228 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 PTENP60484 403 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 IFI35P80217 286 aaPredicted RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 BFSP1Q12934 665 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 C6orf118Q5T5N4 469 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 MIER3Q7Z3K6 550 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 EPS8L3Q8TE67 593 aaKnown RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 ALG3Q92685 438 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 KRT35Q92764 455 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 BTBD6Q96KE9 485 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 RAVER2Q9HCJ3 691 aaKnown RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 ERVK-5Q9HDB9 667 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 XIRP1Q702N8 1843 aaKnown RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 A0A0A6YYK5 440 aaPredicted RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 FAM187AA6NFU0 413 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 BTNL10A8MVZ5 291 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 ONECUT3O60422 494 aaPredicted RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 COMTP21964 271 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 HOXD13P35453 343 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 SREBF1P36956 1147 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 SCTRP47872 440 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 NEDD9Q14511 834 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 NAA25Q14CX7 972 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 GSTA5Q7RTV2 222 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 GDAP1Q8TB36 358 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 HES6Q96HZ4 224 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 LXNQ9BS40 222 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 MIF4GDA9UHW6 222 aaKnown RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 ECEL1O95672 775 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 DLATP10515 647 aaKnown RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 CHRNA3P32297 505 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 MARCKSL1P49006 195 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 CXCL9Q07325 125 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 ADCY2Q08462 1091 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 DHX34Q14147 1143 aaKnown RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 CLUL1Q15846 466 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 SGO2Q562F6 1265 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 NUGGCQ68CJ6 796 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 C1orf54Q8WWF1 131 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 ZDHHC15Q96MV8 337 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 TEKT3Q9BXF9 490 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 ACP6Q9NPH0 428 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 NYAP2Q9P242 653 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 DIS3Q9Y2L1 958 aaKnown RBP11.31□□□□□ -0.6
COL3A1-202ENST00000317840 SUGT1Q9Y2Z0 365 aa11.31□□□□□ -0.6
COL3A1-202ENST00000317840 PODXLO00592 558 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 CYP26A1O43174 497 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 HIP1RO75146 1068 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 PRELPP51888 382 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 CLNS1AP54105 237 aaKnown RBP11.3□□□□□ -0.6
COL3A1-202ENST00000317840 TRAF1Q13077 416 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 LONRF1Q17RB8 773 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 YTHDF3Q7Z739 585 aaKnown RBP11.3□□□□□ -0.6
COL3A1-202ENST00000317840 EIF1ADQ8N9N8 165 aaKnown RBP11.3□□□□□ -0.6
COL3A1-202ENST00000317840 N4BP2L2Q92802 583 aaPredicted RBP11.3□□□□□ -0.6
COL3A1-202ENST00000317840 BICD1Q96G01 975 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 SGSM3Q96HU1 749 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 SLC12A6Q9UHW9 1150 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 AHDC1Q5TGY3 1603 aaPredicted RBP11.3□□□□□ -0.6
COL3A1-202ENST00000317840 TISP43B9A030 160 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 ECHS1P30084 290 aa11.3□□□□□ -0.6
COL3A1-202ENST00000317840 ADCY8P40145 1251 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms