RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ZSCAN5CA6NGD5 496 aaPredicted RBP16.43■□□□□ 0.22
SHH-201ENST00000297261 COASYQ13057 564 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 RHOT2Q8IXI1 618 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 SAYSD1Q9NPB0 183 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 ZFP69BQ9UJL9 534 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 SYNGAP1Q96PV0 1343 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 NDC80O14777 642 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 DYNLT1P63172 113 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 PTK2Q05397 1052 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 DBN1Q16643 649 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 DACT2Q5SW24 774 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 CCDC137Q6PK04 289 aaKnown RBP16.43■□□□□ 0.22
SHH-201ENST00000297261 ZFPM1Q8IX07 1006 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 DTX3LQ8TDB6 740 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 NT5C1BQ96P26 610 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 DONSONQ9NYP3 566 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 USP15Q9Y4E8 981 aaPredicted RBP16.43■□□□□ 0.22
SHH-201ENST00000297261 TULP2O00295 520 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 SHMT1P34896 483 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 FAM102BQ5T8I3 360 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 SUGP1Q8IWZ8 645 aaKnown RBP16.43■□□□□ 0.22
SHH-201ENST00000297261 VCPKMTQ9H867 229 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 IFT122Q9HBG6 1241 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 SSU72P8A0A1W2PR75 194 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 PLS3P13797 630 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 VEGFAP15692 232 aaPredicted RBP16.43■□□□□ 0.22
SHH-201ENST00000297261 SMARCA1P28370 1054 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 SATB1Q01826 763 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 CDR2Q01850 454 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 NXNQ6DKJ4 435 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 MICALL2Q8IY33 904 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 TTC17Q96AE7 1141 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 ZBTB10Q96DT7 871 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 PPARGC1AQ9UBK2 798 aaKnown RBP16.43■□□□□ 0.22
SHH-201ENST00000297261 TTC7AQ9ULT0 858 aaPredicted RBP16.43■□□□□ 0.22
SHH-201ENST00000297261 ARL2BPQ9Y2Y0 163 aa16.43■□□□□ 0.22
SHH-201ENST00000297261 CFAP69A5D8W1 941 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 ATP5HO75947 161 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 HERVK_113P62684 666 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 GADL1Q6ZQY3 521 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 CASKIN2Q8WXE0 1202 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 WRNIP1Q96S55 665 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 ANGPTL2Q9UKU9 493 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 IGF2BP3O00425 579 aaKnown RBP eCLIP16.42■□□□□ 0.22
SHH-201ENST00000297261 SPAG7O75391 227 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 RHOBTB3O94955 611 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 SCTRP47872 440 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 MFAP3P55082 362 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 LMNB2Q03252 620 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 SPP2Q13103 211 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 TBX2Q13207 712 aaPredicted RBP16.42■□□□□ 0.22
SHH-201ENST00000297261 ORC2Q13416 577 aaPredicted RBP16.42■□□□□ 0.22
SHH-201ENST00000297261 CRYMQ14894 314 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 SUPT20HL1Q3ZLR7 823 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 DPY19L2Q6NUT2 758 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 LRIG3Q6UXM1 1119 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 MIF4GDA9UHW6 222 aaKnown RBP16.42■□□□□ 0.22
SHH-201ENST00000297261 EIF2AK2P19525 551 aaKnown RBP16.42■□□□□ 0.22
SHH-201ENST00000297261 ST13P4Q8IZP2 240 aaPredicted RBP16.42■□□□□ 0.22
SHH-201ENST00000297261 RAPGEF5Q92565 580 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 TRIM55Q9BYV6 548 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 CCSER1Q9C0I3 900 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 PLAGL2Q9UPG8 496 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 PCDHAC2Q9Y5I4 1007 aa16.42■□□□□ 0.22
SHH-201ENST00000297261 POTEB3A0JP26 581 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 POTECB2RU33 542 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 CREB3O43889 395 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 SLURP2P0DP57 97 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 STAT3P40763 770 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 POTEBQ6S5H4 581 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 SFR1Q86XK3 245 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 USP38Q8NB14 1042 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 CEP70Q8NHQ1 597 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 EDEM3Q9BZQ6 932 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 CYTH3O43739 400 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 ANP32DO95626 131 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 GLI1P08151 1106 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 ANKS1AQ92625 1134 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 RAVER2Q9HCJ3 691 aaKnown RBP16.41■□□□□ 0.22
SHH-201ENST00000297261 KCND1Q9NSA2 647 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 ACTN1P12814 892 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 MXI1P50539 228 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 LONRF1Q17RB8 773 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 KIAA1755Q5JYT7 1200 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.41■□□□□ 0.22
SHH-201ENST00000297261 HAUS1Q96CS2 278 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 FGD4Q96M96 766 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 IWS1Q96ST2 819 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 KIF9Q9HAQ2 790 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 BCAP29Q9UHQ4 241 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 CNOT7Q9UIV1 285 aaKnown RBP16.41■□□□□ 0.22
SHH-201ENST00000297261 FEM1BQ9UK73 627 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 SLC4A7Q9Y6M7 1214 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 BASP1P80723 227 aaKnown RBP16.41■□□□□ 0.22
SHH-201ENST00000297261 KLC1Q07866 573 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 PPP2R5CQ13362 524 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 CTTNQ14247 550 aaKnown RBP16.41■□□□□ 0.22
SHH-201ENST00000297261 GIMAP8Q8ND71 665 aaPredicted RBP16.41■□□□□ 0.22
SHH-201ENST00000297261 CENPKQ9BS16 269 aa16.41■□□□□ 0.22
SHH-201ENST00000297261 KRT19P08727 400 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 174.2 ms