RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 PPP2R3BQ9Y5P8 575 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 PFASO15067 1338 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 MAFGO15525 162 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 SRGAP2CP0DJJ0 459 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 KRT5P13647 590 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 FERP16591 822 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 TNNI1P19237 187 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 UBA1P22314 1058 aaKnown RBP12.45□□□□□ -0.42
CUX1-202ENST00000292538 PLA2G4AP47712 749 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 GALCP54803 685 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 LLGL1Q15334 1064 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 GPR162Q16538 588 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 EPC2Q52LR7 807 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 TMEM63BQ5T3F8 832 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 ABHD15Q6UXT9 468 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 SPATA4Q8NEY3 305 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 CCDC102AQ96A19 550 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 STRA6Q9BX79 667 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 XPNPEP1Q9NQW7 623 aa12.45□□□□□ -0.42
CUX1-202ENST00000292538 BZW2Q9Y6E2 419 aaKnown RBP12.45□□□□□ -0.42
CUX1-202ENST00000292538 GRID2IPA4D2P6 1211 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 CCDC151A5D8V7 595 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 NOP56O00567 594 aaKnown RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 CEP104O60308 925 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 DGAT1O75907 488 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 ZRANB2O95218 330 aaKnown RBP eCLIP12.44□□□□□ -0.42
CUX1-202ENST00000292538 LYPLA2O95372 231 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 SUPT20HL2P0C7V6 817 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 GHRHRQ02643 423 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 EMC2Q15006 297 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 PPP2R5AQ15172 486 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 CCDC70Q6NSX1 233 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 ZNF662Q6ZS27 426 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 DEPTORQ8TB45 409 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 LNX1Q8TBB1 728 aaPredicted RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 SLC7A3Q8WY07 619 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 KIFAP3Q92845 792 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 COPS5Q92905 334 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 RBM12Q9NTZ6 932 aaKnown RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 UBE4BO95155 1302 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 ESYT3A0FGR9 886 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 SOWAHBA6NEL2 793 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 CYP26A1O43174 497 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 ATP4AP20648 1035 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 EPHX2P34913 555 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 JAM2P57087 298 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 STRN3Q13033 797 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 DRP2Q13474 957 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 BIRC3Q13489 604 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 RPS6KA1Q15418 735 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 XRRA1Q6P2D8 792 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 FBXO16Q8IX29 292 aaPredicted RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 LRRC71Q8N4P6 559 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 CHST13Q8NET6 341 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 DHX38Q92620 1227 aaKnown RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 SEMA4DQ92854 862 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 AP1M1Q9BXS5 423 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 PDE11AQ9HCR9 933 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 PJA2O43164 708 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 ATMINO43313 823 aaPredicted RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 TCP1P17987 556 aaKnown RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 TCF7P36402 384 aaPredicted RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 IGBP1P78318 339 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 SMC1AQ14683 1233 aaKnown RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 BRD3Q15059 726 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 XKR3Q5GH77 459 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 GJC2Q5T442 439 aaPredicted RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 NAA35Q5VZE5 725 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 PEX26Q7Z412 305 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 ZBTB33Q86T24 672 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 ANKRD13AQ8IZ07 590 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 RNF10Q8N5U6 811 aaKnown RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 TAS1R2Q8TE23 839 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 IFT81Q8WYA0 676 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 IWS1Q96ST2 819 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 FUT8Q9BYC5 575 aa12.44□□□□□ -0.42
CUX1-202ENST00000292538 POLR2AP24928 1970 aaKnown RBP12.44□□□□□ -0.42
CUX1-202ENST00000292538 MYH10P35580 1976 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 K7ERI5 159 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 SGPL1O95470 568 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 POTEJP0CG39 1038 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 STAT5BP51692 787 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 NCKAP1LP55160 1127 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 NOL9Q5SY16 702 aaKnown RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 SLC39A4Q6P5W5 647 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 CDR2LQ86X02 465 aaPredicted RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 ERO1BQ86YB8 467 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 RPUSD2Q8IZ73 545 aaKnown RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 SAMD3Q8N6K7 520 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 CTNNBL1Q8WYA6 563 aaPredicted RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 FNBP1Q96RU3 617 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 TARS2Q9BW92 718 aaKnown RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 THAP2Q9H0W7 228 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 AZI2Q9H6S1 392 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 DMGDHQ9UI17 866 aaKnown RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 GTPBP10A4D1E9 387 aaKnown RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 LRRIQ3A6PVS8 624 aaPredicted RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 N4BP1O75113 896 aaKnown RBP12.43□□□□□ -0.42
CUX1-202ENST00000292538 GJB1P08034 283 aa12.43□□□□□ -0.42
CUX1-202ENST00000292538 MYBL2P10244 700 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms