RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 VWDEQ8N2E2 1590 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 SKA2Q8WVK7 121 aaPredicted RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 MTMR4Q9NYA4 1195 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 STOML1Q9UBI4 398 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 IP6K2Q9UHH9 426 aa11.47□□□□□ -0.57
CD44-201ENST00000263398 G3BP2Q9UN86 482 aaKnown RBP11.47□□□□□ -0.57
CD44-201ENST00000263398 FDX1P10109 184 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 ZSCAN20P17040 1043 aaPredicted RBP11.46□□□□□ -0.57
CD44-201ENST00000263398 BYSLQ13895 437 aaKnown RBP11.46□□□□□ -0.57
CD44-201ENST00000263398 KRT80Q6KB66 452 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 CCNI2Q6ZMN8 369 aaPredicted RBP11.46□□□□□ -0.57
CD44-201ENST00000263398 CATSPER4Q7RTX7 472 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 HPS3Q969F9 1004 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 TUFT1Q9NNX1 390 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 ESYT2A0FGR8 921 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 CFLARO15519 480 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 HSPA4LO95757 839 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 HSPA8P11142 646 aaKnown RBP11.46□□□□□ -0.57
CD44-201ENST00000263398 GNA15P30679 374 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 MDM2Q00987 491 aaPredicted RBP11.46□□□□□ -0.57
CD44-201ENST00000263398 TNFAIP2Q03169 654 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 RNF139Q8WU17 664 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 DHX38Q92620 1227 aaKnown RBP11.46□□□□□ -0.57
CD44-201ENST00000263398 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.46□□□□□ -0.57
CD44-201ENST00000263398 TTC1Q99614 292 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 TOPORSQ9NS56 1045 aaPredicted RBP11.46□□□□□ -0.57
CD44-201ENST00000263398 GABBR1Q9UBS5 961 aa11.46□□□□□ -0.57
CD44-201ENST00000263398 HERC5Q9UII4 1024 aaKnown RBP11.46□□□□□ -0.57
CD44-201ENST00000263398 APOBEC2Q9Y235 224 aaKnown RBP11.46□□□□□ -0.57
CD44-201ENST00000263398 SLC16A3O15427 465 aaKnown RBP11.46□□□□□ -0.58
CD44-201ENST00000263398 MX2P20592 715 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 ZNF543Q08ER8 600 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 EDRF1Q3B7T1 1238 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 Q3C1V9 767 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 ZNF568Q3ZCX4 644 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 KLC3Q6P597 504 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 PRPF31Q8WWY3 499 aaKnown RBP11.46□□□□□ -0.58
CD44-201ENST00000263398 SNF8Q96H20 258 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 AGPAT1Q99943 283 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 UPF3AQ9H1J1 476 aaKnown RBP11.46□□□□□ -0.58
CD44-201ENST00000263398 MLXIPLQ9NP71 852 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 FIS1Q9Y3D6 152 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 MROH1Q8NDA8 1641 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 OVOS2A0A0J9YW53 1432 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 OVOS2Q6IE36 1432 aa11.46□□□□□ -0.58
CD44-201ENST00000263398 C21orf2O43822 256 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 SDC4P31431 198 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 IREB2P48200 963 aaKnown RBP11.45□□□□□ -0.58
CD44-201ENST00000263398 GRAMD1BQ3KR37 738 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 ZNF34Q8IZ26 560 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 GRAMD1AQ96CP6 724 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 SAAL1Q96ER3 474 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 DONSONQ9NYP3 566 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 HEY1Q9Y5J3 304 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 DIP2BQ9P265 1576 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 ATP8B3O60423 1300 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 ZNF185O15231 689 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 HAUS5O94927 633 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 KRT14P02533 472 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 GYPCP04921 128 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 GPS1Q13098 491 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 KIF22Q14807 665 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 SLC27A3Q5K4L6 730 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 SNRNP48Q6IEG0 339 aaKnown RBP11.45□□□□□ -0.58
CD44-201ENST00000263398 NYAP1Q6ZVC0 841 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 SMIM5Q71RC9 77 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 ATP11CQ8NB49 1132 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 STK33Q9BYT3 514 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 ZFP69BQ9UJL9 534 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 INTUQ9ULD6 942 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 OVOS2A0A0G2JMS6 1433 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 CFAP73A6NFT4 308 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 TBX3O15119 743 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 FOXP2O15409 715 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 ECE2O60344 883 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 UCHL3P15374 230 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 GPSM2P81274 684 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 RSBN1LQ6PCB5 846 aaPredicted RBP11.45□□□□□ -0.58
CD44-201ENST00000263398 TGS1Q96RS0 853 aaKnown RBP11.45□□□□□ -0.58
CD44-201ENST00000263398 PPP1R16BQ96T49 567 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 MTRQ99707 1265 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 C2orf40Q9H1Z8 148 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 EPB41L4AQ9HCS5 686 aaPredicted RBP11.45□□□□□ -0.58
CD44-201ENST00000263398 KLHL8Q9P2G9 620 aaPredicted RBP11.45□□□□□ -0.58
CD44-201ENST00000263398 PDS5AQ29RF7 1337 aaKnown RBP11.45□□□□□ -0.58
CD44-201ENST00000263398 IQSEC2Q5JU85 1478 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 H0Y3Z8 333 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 PSMD14O00487 310 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 RTN2O75298 545 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 SPAG7O75391 227 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 NMT1P30419 496 aaKnown RBP11.45□□□□□ -0.58
CD44-201ENST00000263398 CYP2C19P33261 490 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 PHKA2P46019 1235 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 SWSAP1Q6NVH7 229 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 RNF168Q8IYW5 571 aaPredicted RBP11.45□□□□□ -0.58
CD44-201ENST00000263398 TTC39CQ8N584 583 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 RGL1Q9NZL6 768 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 SENP1Q9P0U3 644 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 SLC9A2Q9UBY0 812 aa11.45□□□□□ -0.58
CD44-201ENST00000263398 MYMKA6NI61 221 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms