RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 TIFAQ96CG3 184 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 MTMR9Q96QG7 549 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 SLC28A3Q9HAS3 691 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 LCTP09848 1927 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 CTAGE9A4FU28 777 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 hCG_1984214I3L0E3 225 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 GAS7O60861 476 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 IQCF3P0C7M6 154 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 GNAT1P11488 350 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 DNM2P50570 870 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 PPFIA1Q13136 1202 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 AP3B2Q13367 1082 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 RAPGEF1Q13905 1077 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 SKIDA1Q1XH10 827 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 LRCH2Q5VUJ6 765 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 LRRC8DQ7L1W4 858 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 CATSPER3Q86XQ3 398 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 TMTC1Q8IUR5 882 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 FAM114A1Q8IWE2 563 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 MICALL1Q8N3F8 863 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 ZNF713Q8N859 430 aaPredicted RBP9.47□□□□□ -0.89
VPS4B-201ENST00000238497 SLC17A8Q8NDX2 589 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 ERMNQ8TAM6 284 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 DHTKD1Q96HY7 919 aaPredicted RBP9.47□□□□□ -0.89
VPS4B-201ENST00000238497 SLC9A2Q9UBY0 812 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 LIMA1Q9UHB6 759 aaKnown RBP9.47□□□□□ -0.89
VPS4B-201ENST00000238497 CDH23Q9H251 3354 aa9.47□□□□□ -0.89
VPS4B-201ENST00000238497 LGALS16A8MUM7 142 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 BUB1O43683 1085 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 ZMYND10O75800 440 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 SELPP16109 830 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 ATP2A2P16615 1042 aaKnown RBP9.46□□□□□ -0.89
VPS4B-201ENST00000238497 CXCR5P32302 372 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 ICAM3P32942 547 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 POLR2FP61218 127 aaKnown RBP9.46□□□□□ -0.89
VPS4B-201ENST00000238497 UNC13DQ70J99 1090 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 BANK1Q8NDB2 785 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 NEK11Q8NG66 645 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 MYLIPQ8WY64 445 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 EMID1Q96A84 441 aaPredicted RBP9.46□□□□□ -0.89
VPS4B-201ENST00000238497 SENP7Q9BQF6 1050 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 C16orf70Q9BSU1 422 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 NDST4Q9H3R1 872 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 MTMR10Q9NXD2 777 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 MYH7BA7E2Y1 1941 aa9.46□□□□□ -0.89
VPS4B-201ENST00000238497 FANCGO15287 622 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 EDIL3O43854 480 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 FAM13AO94988 1023 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 NDUFA10O95299 355 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 PTPN11Q06124 597 aaPredicted RBP9.46□□□□□ -0.9
VPS4B-201ENST00000238497 SFR1Q86XK3 245 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 ELOA2Q8IYF1 753 aaPredicted RBP9.46□□□□□ -0.9
VPS4B-201ENST00000238497 SYCP3Q8IZU3 236 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 C7orf25Q9BPX7 421 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 ZNF577Q9BSK1 485 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 ST7Q9NRC1 585 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 CGNQ9P2M7 1197 aaKnown RBP9.46□□□□□ -0.9
VPS4B-201ENST00000238497 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.46□□□□□ -0.9
VPS4B-201ENST00000238497 UBIAD1Q9Y5Z9 338 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 EPHB6O15197 1021 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 CKBP12277 381 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 KCNA2P16389 499 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 NR2F2P24468 414 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 CYP2J2P51589 502 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 PPARDQ03181 441 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 KCNA1Q09470 495 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 ZNF618Q5T7W0 954 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 TMCO3Q6UWJ1 677 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 TMCO2Q7Z6W1 182 aaPredicted RBP9.46□□□□□ -0.9
VPS4B-201ENST00000238497 ZBTB10Q96DT7 871 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 DYDC2Q96IM9 177 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 PANX2Q96RD6 677 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 CCDC94Q9BW85 323 aaPredicted RBP9.46□□□□□ -0.9
VPS4B-201ENST00000238497 ERAP1Q9NZ08 941 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 MTUS1Q9ULD2 1270 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 NCOR1O75376 2440 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 MYO7AQ13402 2215 aa9.46□□□□□ -0.9
VPS4B-201ENST00000238497 TRIP12Q14669 1992 aaPredicted RBP9.45□□□□□ -0.9
VPS4B-201ENST00000238497 ESYT2A0FGR8 921 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 EML1O00423 815 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 UPP2O95045 317 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 MYOGP15173 224 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 FOSL2P15408 326 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 EEF1GP26641 437 aaKnown RBP9.45□□□□□ -0.9
VPS4B-201ENST00000238497 USP8P40818 1118 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 TMEM62Q0P6H9 643 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 KCNB1Q14721 858 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 ZC2HC1CQ53FD0 456 aaPredicted RBP9.45□□□□□ -0.9
VPS4B-201ENST00000238497 HAUS3Q68CZ6 603 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 MTERF4Q7Z6M4 381 aaKnown RBP9.45□□□□□ -0.9
VPS4B-201ENST00000238497 AFAP1L1Q8TED9 768 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 PPP1R16BQ96T49 567 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 PBX4Q9BYU1 374 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 NKX2-4Q9H2Z4 354 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 SMARCAD1Q9H4L7 1026 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 STK17AQ9UEE5 414 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 TMEM150BA6NC51 233 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 TMCO5BA8MYB1 307 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 PITPNM1O00562 1244 aa9.45□□□□□ -0.9
VPS4B-201ENST00000238497 MSH4O15457 936 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms