RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SNAPC2Q13487 334 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 PRPF4BQ13523 1007 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 DIXDC1Q155Q3 683 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 PTGISQ16647 500 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 KRT71Q3SY84 523 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 HYIQ5T013 277 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 DENND2CQ68D51 928 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 DAAM2Q86T65 1068 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 USP37Q86T82 979 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 MAIP1Q8WWC4 291 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 MKL1Q969V6 931 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 OTUD5Q96G74 571 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 PNMA5Q96PV4 448 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 FAM129AQ9BZQ8 928 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 GOPCQ9HD26 462 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 MTMR4Q9NYA4 1195 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 ADAMTS1Q9UHI8 967 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 LCMT1Q9UIC8 334 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SSC5DA1L4H1 1573 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 GTPBP10A4D1E9 387 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 ZNF263O14978 683 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SGPL1O95470 568 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 TDP2O95551 362 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 PDHBP11177 359 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 KCNA3P22001 575 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SLC8A1P32418 973 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 PSMC2P35998 433 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 PICALMQ13492 652 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 KNOP1Q1ED39 458 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 C1QTNF12Q5T7M4 302 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 KCTD16Q68DU8 428 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SLC44A5Q8NCS7 719 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 MORC4Q8TE76 937 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 U2AF1L4Q8WU68 220 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 FAM163AQ96GL9 167 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 DHX36Q9H2U1 1008 aaKnown RBP4.31□□□□□ -1.72
SCN1A-214ENST00000637038 CD209Q9NNX6 404 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 TMEM260Q9NX78 707 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SEL1LQ9UBV2 794 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 SERPINB13Q9UIV8 391 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 FBXL5Q9UKA1 691 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 PLIN4Q96Q06 1357 aa4.31□□□□□ -1.72
SCN1A-214ENST00000637038 PFASO15067 1338 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 GMNCA6NCL1 334 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 AGPSO00116 658 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CHUKO15111 745 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 GCNT3O95395 438 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 GGPS1O95749 300 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CETN2P41208 172 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 PPP2R2AP63151 447 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 ALCAMQ13740 583 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 DHX34Q14147 1143 aaKnown RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 SPRYD7Q5W111 196 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 RHOT2Q8IXI1 618 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 SYCP3Q8IZU3 236 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 LRRC47Q8N1G4 583 aaKnown RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 ZNF473Q8WTR7 871 aaKnown RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 MTMR8Q96EF0 704 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 MMTAG2Q9BU76 263 aaKnown RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 MKNK1Q9BUB5 465 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 RTFDC1Q9BY42 306 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 ANO3Q9BYT9 981 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 PLEKHA4Q9H4M7 779 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 HMX1Q9NP08 348 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 TBC1D7Q9P0N9 293 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CXXC1Q9P0U4 656 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 NENFQ9UMX5 172 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 TFR2Q9UP52 801 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 SLC45A1Q9Y2W3 748 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 PCDHB13Q9Y5F0 798 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 FSBPO95073 299 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 NTRK1P04629 796 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 MYBL2P10244 700 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 ACTN1P12814 892 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 KLRK1P26718 216 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 PRKCIP41743 596 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CARSP49589 748 aaKnown RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 SLMAPQ14BN4 828 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 ZC3H12AQ5D1E8 599 aaKnown RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 IFNL1Q8IU54 200 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 FAM186BQ8IYM0 893 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 NEK9Q8TD19 979 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 DYDC1Q8WWB3 177 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 CASKIN2Q8WXE0 1202 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 SOCS4Q8WXH5 440 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 RFFLQ8WZ73 363 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 FMO2Q99518 471 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 PAGR1Q9BTK6 254 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 AMNQ9BXJ7 453 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 TMBIM4Q9HC24 238 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 GCNT4Q9P109 453 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 RABGAP1Q9Y3P9 1069 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 NOC2LQ9Y3T9 749 aaKnown RBP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 SAMM50Q9Y512 469 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 NDC80O14777 642 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 EIF3DO15371 548 aaKnown RBP eCLIP4.3□□□□□ -1.72
SCN1A-214ENST00000637038 RAD51CO43502 376 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 NR3C1P04150 777 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 POTEJP0CG39 1038 aa4.3□□□□□ -1.72
SCN1A-214ENST00000637038 UCHL3P15374 230 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms