RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SYCP1Q15431 976 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 DEFB115Q30KQ5 88 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 CYP4F22Q6NT55 531 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 ZPBP2Q6X784 338 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 TRIM50Q86XT4 487 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 XXYLT1Q8NBI6 393 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 ZNF397Q8NF99 534 aaPredicted RBP11.57□□□□□ -0.56
CLN3-248ENST00000636355 OR6J1Q8NGC5 347 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 DEPTORQ8TB45 409 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 AFG1LQ8WV93 481 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 BSNDQ8WZ55 320 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 SLC35C1Q96A29 364 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 BORCS6Q96GS4 357 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 FBXL18Q96ME1 805 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 KATNAL1Q9BW62 490 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 PLCB1Q9NQ66 1216 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 FBXL5Q9UKA1 691 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 MYO6Q9UM54 1294 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 LUC7L2Q9Y383 392 aaKnown RBP11.57□□□□□ -0.56
CLN3-248ENST00000636355 STYXL1Q9Y6J8 313 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 SCN10AQ9Y5Y9 1956 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 ADGRA3Q8IWK6 1321 aa11.57□□□□□ -0.56
CLN3-248ENST00000636355 GOLGA6L9A6NEM1 432 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 RRN3P2A6NIE6 340 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 ADCY3O60266 1144 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 SORBS3O60504 671 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 KPNA6O60684 536 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 C22orf31O95567 290 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 KRT13P13646 458 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 AKR1A1P14550 325 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 GLRA2P23416 452 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 HNRNPH3P31942 346 aaKnown RBP11.56□□□□□ -0.56
CLN3-248ENST00000636355 NKX3-2P78367 333 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 ZBED6P86452 979 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 CDK17Q00537 523 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 CDC42EP1Q00587 391 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 MLLT1Q03111 559 aaPredicted RBP11.56□□□□□ -0.56
CLN3-248ENST00000636355 RBL2Q08999 1139 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 LRMPQ12912 555 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 BFSP1Q12934 665 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 MEA1Q16626 185 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 RALGAPA2Q2PPJ7 1873 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 MFSD14CQ5VZR4 134 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 CEP135Q66GS9 1140 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 SMYD5Q6GMV2 418 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 SLFN12LQ6IEE8 588 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 PAXIP1Q6ZW49 1069 aaPredicted RBP11.56□□□□□ -0.56
CLN3-248ENST00000636355 MAEAQ7L5Y9 396 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 TLK2Q86UE8 772 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 IFNLR1Q8IU57 520 aaPredicted RBP11.56□□□□□ -0.56
CLN3-248ENST00000636355 TMEM139Q8IV31 216 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 ZBTB8OSQ8IWT0 167 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 LINC01465Q8N7H1 131 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 COPS5Q92905 334 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 BAG1Q99933 345 aaPredicted RBP11.56□□□□□ -0.56
CLN3-248ENST00000636355 C16orf70Q9BSU1 422 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 ABHD10Q9NUJ1 306 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 HSPBP1Q9NZL4 362 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 CEP72Q9P209 647 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 FRMPD3Q5JV73 1810 aa11.56□□□□□ -0.56
CLN3-248ENST00000636355 LRRIQ4A6NIV6 560 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 H3BRB1 525 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 EXOC3O60645 756 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 CYBAP13498 195 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 TMOD1P28289 359 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 CNGA1P29973 690 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 CASP14P31944 242 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 KCNH2Q12809 1159 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 CAPSQ13938 189 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 PCBP1Q15365 356 aaKnown RBP eCLIP11.55□□□□□ -0.56
CLN3-248ENST00000636355 TSR1Q2NL82 804 aaKnown RBP11.55□□□□□ -0.56
CLN3-248ENST00000636355 CYP26C1Q6V0L0 522 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 TMTC1Q8IUR5 882 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 CREBRFQ8IUR6 639 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 NEK11Q8NG66 645 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 OR8K1Q8NGG5 319 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 TMC2Q8TDI7 906 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 ASAP3Q8TDY4 903 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 SYN2Q92777 582 aaPredicted RBP11.55□□□□□ -0.56
CLN3-248ENST00000636355 EEF2KMTQ96G04 330 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 SH2D3AQ9BRG2 576 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 CCDC113Q9H0I3 377 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 TUT1Q9H6E5 874 aaKnown RBP11.55□□□□□ -0.56
CLN3-248ENST00000636355 PRDM10Q9NQV6 1147 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 SAGE1Q9NXZ1 904 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 PYCARDQ9ULZ3 195 aa11.55□□□□□ -0.56
CLN3-248ENST00000636355 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.54□□□□□ -0.56
CLN3-248ENST00000636355 TTC26A0AVF1 554 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 KIF2AO00139 706 aaPredicted RBP11.54□□□□□ -0.56
CLN3-248ENST00000636355 DUSP11O75319 330 aaKnown RBP11.54□□□□□ -0.56
CLN3-248ENST00000636355 LDHAP00338 332 aaKnown RBP11.54□□□□□ -0.56
CLN3-248ENST00000636355 TUBB4AP04350 444 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 RPLP2P05387 115 aaKnown RBP11.54□□□□□ -0.56
CLN3-248ENST00000636355 MARK3P27448 753 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 GTF2H1P32780 548 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 KRT9P35527 623 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 PSMC4P43686 418 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 LIG4P49917 911 aa11.54□□□□□ -0.56
CLN3-248ENST00000636355 FXR1P51114 621 aaKnown RBP eCLIP11.54□□□□□ -0.56
CLN3-248ENST00000636355 CYP2J2P51589 502 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms