RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 ATP11AP98196 1134 aa15.21■□□□□ 0.03
LDB3-209ENST00000623056 MEX3CQ5U5Q3 659 aaKnown RBP15.21■□□□□ 0.03
LDB3-209ENST00000623056 SFR1Q86XK3 245 aa15.21■□□□□ 0.03
LDB3-209ENST00000623056 THAP2Q9H0W7 228 aa15.21■□□□□ 0.03
LDB3-209ENST00000623056 ARHGEF10LQ9HCE6 1279 aa15.21■□□□□ 0.03
LDB3-209ENST00000623056 ZNF652Q9Y2D9 606 aa15.21■□□□□ 0.03
LDB3-209ENST00000623056 GTPBP10A4D1E9 387 aaKnown RBP15.21■□□□□ 0.02
LDB3-209ENST00000623056 POTEFA5A3E0 1075 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 POTEIP0CG38 1075 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 CREB1P16220 341 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 RFC4P35249 363 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 CLK2P49760 499 aaKnown RBP15.21■□□□□ 0.02
LDB3-209ENST00000623056 INHBEP58166 350 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 RPS8P62241 208 aaKnown RBP15.21■□□□□ 0.02
LDB3-209ENST00000623056 GIT2Q14161 759 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 GRIK5Q16478 980 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 LONRF1Q17RB8 773 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 POTEGQ6S5H5 508 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 POTEEQ6S8J3 1075 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 ZDHHC14Q8IZN3 488 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 SYT11Q9BT88 431 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 FAM167BQ9BTA0 163 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 ROPN1BQ9BZX4 212 aaPredicted RBP15.21■□□□□ 0.02
LDB3-209ENST00000623056 ROPN1Q9HAT0 212 aaPredicted RBP15.21■□□□□ 0.02
LDB3-209ENST00000623056 TAS2R14Q9NYV8 317 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 PRKAG3Q9UGI9 489 aa15.21■□□□□ 0.02
LDB3-209ENST00000623056 DDX60LQ5H9U9 1706 aaKnown RBP15.2■□□□□ 0.02
LDB3-209ENST00000623056 ASTN1O14525 1302 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 SPATA31A6Q5VVP1 1343 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 SYNGAP1Q96PV0 1343 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 ENO4A6NNW6 628 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 ANKRD63C9JTQ0 380 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 SLC16A3O15427 465 aaKnown RBP15.2■□□□□ 0.02
LDB3-209ENST00000623056 LUC7L3O95232 432 aaKnown RBP15.2■□□□□ 0.02
LDB3-209ENST00000623056 ALAS1P13196 640 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 HSPA6P17066 643 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 CTNNA2P26232 953 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 STAT3P40763 770 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 PPP4CP60510 307 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 VSTM1Q6UX27 236 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 KCNV2Q8TDN2 545 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 ARHGEF2Q92974 986 aaKnown RBP15.2■□□□□ 0.02
LDB3-209ENST00000623056 RMDN2Q96LZ7 410 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 PLCD4Q9BRC7 762 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 MXD3Q9BW11 206 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 MLXIPLQ9NP71 852 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.2■□□□□ 0.02
LDB3-209ENST00000623056 PFASO15067 1338 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 A6NHS1 94 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 LINGO3P0C6S8 592 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 DRAP1Q14919 205 aaPredicted RBP15.2■□□□□ 0.02
LDB3-209ENST00000623056 TAF11Q15544 211 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 CCDC137Q6PK04 289 aaKnown RBP15.2■□□□□ 0.02
LDB3-209ENST00000623056 CCDC25Q86WR0 208 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 ANKRD42Q8N9B4 389 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 KRT35Q92764 455 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 ART4Q93070 314 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 RUNDC3BQ96NL0 473 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 NLRP3Q96P20 1036 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 REEP2Q9BRK0 252 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 ANKRD2Q9GZV1 360 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 TYW1Q9NV66 732 aaKnown RBP15.2■□□□□ 0.02
LDB3-209ENST00000623056 ALG6Q9Y672 507 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 EP400Q96L91 3159 aa15.2■□□□□ 0.02
LDB3-209ENST00000623056 CLIC2O15247 247 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 PPP1R11O60927 126 aaPredicted RBP15.19■□□□□ 0.02
LDB3-209ENST00000623056 WFS1O76024 890 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 CCNB1P14635 433 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 MARCKSL1P49006 195 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 BIRC2Q13490 618 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 PPP1R18Q6NYC8 613 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 PALB2Q86YC2 1186 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 GDAP1Q8TB36 358 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 CKAP2Q8WWK9 683 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 SH3GL3Q99963 347 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 DDX23Q9BUQ8 820 aaKnown RBP15.19■□□□□ 0.02
LDB3-209ENST00000623056 STK33Q9BYT3 514 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 YIPF3Q9GZM5 350 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 DNAJC12Q9UKB3 198 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 PCDHB13Q9Y5F0 798 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 ARFGEF1Q9Y6D6 1849 aa15.19■□□□□ 0.02
LDB3-209ENST00000623056 HGSO14964 777 aaPredicted RBP15.18■□□□□ 0.02
LDB3-209ENST00000623056 RPL13P26373 211 aaKnown RBP15.18■□□□□ 0.02
LDB3-209ENST00000623056 PDE6BP35913 854 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 NOVP48745 357 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 GSTO1P78417 241 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 GPR88Q9GZN0 384 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 GPCPD1Q9NPB8 672 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 SEPT11Q9NVA2 429 aaKnown RBP15.18■□□□□ 0.02
LDB3-209ENST00000623056 ANKRD62A6NC57 917 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 PSMC6P62333 389 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 MGAT5Q09328 741 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 PABPC4Q13310 644 aaKnown RBP eCLIP15.18■□□□□ 0.02
LDB3-209ENST00000623056 ZNF568Q3ZCX4 644 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 ASPRV1Q53RT3 343 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 CGB2Q6NT52 195 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 TRMT10CQ7L0Y3 403 aaKnown RBP15.18■□□□□ 0.02
LDB3-209ENST00000623056 LRRC47Q8N1G4 583 aaKnown RBP15.18■□□□□ 0.02
LDB3-209ENST00000623056 UBL4BQ8N7F7 174 aa15.18■□□□□ 0.02
LDB3-209ENST00000623056 ANKLE1Q8NAG6 615 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms