RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 VCPKMTQ9H867 229 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 NOVA2Q9UNW9 492 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 STXBP5LQ9Y2K9 1186 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 ZHX2Q9Y6X8 837 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 ANKRD31Q8N7Z5 1873 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 TLDC2A0PJX2 215 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 HSPA9P38646 679 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 MARCKSL1P49006 195 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 VAMP7P51809 220 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 PLTPP55058 493 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 MAP2K1Q02750 393 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 FAM102BQ5T8I3 360 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 RNF187Q5TA31 235 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 PHLDB2Q86SQ0 1253 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 CNKSR1Q969H4 720 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 LRRC45Q96CN5 670 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 SAAL1Q96ER3 474 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 AGPAT1Q99943 283 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 MXRA8Q9BRK3 442 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 RANBP17Q9H2T7 1088 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 RAVER2Q9HCJ3 691 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 LARSQ9P2J5 1176 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 SNX24Q9Y343 169 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 DCDC2CA8MYV0 355 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 CALCAP01258 141 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 TMEM253P0C7T8 217 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 BCRP11274 1271 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 NPEPPSP55786 919 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 DR1Q01658 176 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 CETN1Q12798 172 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 KRT71Q3SY84 523 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 TTC31Q49AM3 519 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 PLA2G4FQ68DD2 849 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 SLFN11Q7Z7L1 901 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 ALG3Q92685 438 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 KRT35Q92764 455 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 PTPN22Q9Y2R2 807 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 ALG6Q9Y672 507 aa13.99□□□□□ -0.17
CCDC88A-214ENST00000621814 CCDC188H7C350 402 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 CCDC172P0C7W6 258 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 ZNF844Q08AG5 666 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 MAPK7Q13164 816 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 KDM7AQ6ZMT4 941 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 CPNE8Q86YQ8 564 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 C10orf71Q711Q0 1435 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 LRRC37AA6NMS7 1700 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 SGPL1O95470 568 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 SOX10P56693 466 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 SKOR1P84550 965 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 TNIP1Q15025 636 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 NSMFQ6X4W1 530 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 MREGQ8N565 214 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 C18orf8Q96DM3 657 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 MKNK1Q9BUB5 465 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 TMBIM4Q9HC24 238 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 SEL1LQ9UBV2 794 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 ODF2LQ9ULJ1 636 aa13.98□□□□□ -0.17
CCDC88A-214ENST00000621814 TESPA1A2RU30 521 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 CYP26A1O43174 497 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 MDH1P40925 334 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 ZNF131P52739 623 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 ITGB3BPQ13352 177 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 PPM1EQ8WY54 764 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 CALR3Q96L12 384 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 DMAC2Q9NW81 257 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 ATRNL1Q5VV63 1379 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 SIPA1L1O43166 1804 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 A0A0A6YYK5 440 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 HMGB1P1B2RPK0 211 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 MYO1FO00160 1098 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 CES2O00748 559 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 DDX3YO15523 660 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 PPP1R37O75864 691 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 MAGOHP61326 146 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 FKBP1AP62942 108 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 TRAF1Q13077 416 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 SLC15A2Q16348 729 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 STYK1Q6J9G0 422 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 HAUS6Q7Z4H7 955 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 FAM151AQ8WW52 585 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 MAGOHBQ96A72 148 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 HSPBP1Q9NZL4 362 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 NENFQ9UMX5 172 aa13.97□□□□□ -0.17
CCDC88A-214ENST00000621814 GOLGA6L10A0A0M3HER8 536 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 ANKRD62A6NC57 917 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 NPM3O75607 178 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 KIAA0754O94854 1291 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 ZBTB48P10074 688 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 YWHABP31946 246 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 SETQ01105 290 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 MTMR1Q13613 665 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 PPP2R5AQ15172 486 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 NBPF9Q3BBW0 867 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 RSBN1LQ6PCB5 846 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 SLC47A2Q86VL8 602 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 RASGEF1CQ8N431 466 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 OLIG1Q8TAK6 271 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 FMO2Q99518 471 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 INTUQ9ULD6 942 aa13.96□□□□□ -0.17
CCDC88A-214ENST00000621814 CTDP1Q9Y5B0 961 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms