RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 LAG3P18627 525 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 ST3GAL1Q11201 340 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 NR5A1Q13285 461 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 KCNC3Q14003 757 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 XKR3Q5GH77 459 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 LLGL2Q6P1M3 1020 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 KCNT2Q6UVM3 1135 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 PIK3AP1Q6ZUJ8 805 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 KRT25Q7Z3Z0 450 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 RNF135Q8IUD6 432 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 RDM1Q8NG50 284 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 APOL5Q9BWW9 433 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 SUCLA2Q9P2R7 463 aaPredicted RBP12.85□□□□□ -0.35
CPNE3-210ENST00000621245 WDR87Q6ZQQ6 2873 aa12.85□□□□□ -0.35
CPNE3-210ENST00000621245 ZDBF2Q9HCK1 2354 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 PRR33A8MZF0 331 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 JAK2O60674 1132 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 MAFO75444 373 aaPredicted RBP12.84□□□□□ -0.35
CPNE3-210ENST00000621245 TMOD1P28289 359 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 AFF1P51825 1210 aaKnown RBP12.84□□□□□ -0.35
CPNE3-210ENST00000621245 UBE3AQ05086 875 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 SPIRE1Q08AE8 756 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 COASYQ13057 564 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 PPP2R5CQ13362 524 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 ODR4Q5SWX8 454 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 MOXD1Q6UVY6 613 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 RHPN2Q8IUC4 686 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 HOMEZQ8IX15 550 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 SLC39A11Q8N1S5 342 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 LRRC43Q8N309 656 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 MICAL1Q8TDZ2 1067 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 AUTS2Q8WXX7 1259 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 MRPS27Q92552 414 aaKnown RBP12.84□□□□□ -0.35
CPNE3-210ENST00000621245 TNFRSF25Q93038 417 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 TMEM143Q96AN5 459 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 FAM122AQ96E09 287 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 NLRP4Q96MN2 994 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 TCF25Q9BQ70 676 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 FAM117AQ9C073 453 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 SLKQ9H2G2 1235 aaPredicted RBP12.84□□□□□ -0.35
CPNE3-210ENST00000621245 MINDY3Q9H8M7 445 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 RGL1Q9NZL6 768 aa12.84□□□□□ -0.35
CPNE3-210ENST00000621245 PIEZO1Q92508 2521 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 A0A0U1RQF3 1178 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 CCNT1O60563 726 aaKnown RBP12.83□□□□□ -0.36
CPNE3-210ENST00000621245 SEC24BO95487 1268 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 ZSCAN20P17040 1043 aaPredicted RBP12.83□□□□□ -0.36
CPNE3-210ENST00000621245 PHKA2P46019 1235 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 PLCB3Q01970 1234 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 ME3Q16798 604 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 GALNT17Q6IS24 598 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 SYCE2Q6PIF2 218 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 HFE2Q6ZVN8 426 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 NEK8Q86SG6 692 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 DDX12PQ92771 950 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 DYDC2Q96IM9 177 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 ZNF558Q96NG5 402 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 LXNQ9BS40 222 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 VN1R3Q9BXE9 311 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 C22orf23Q9BZE7 217 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 IFT122Q9HBG6 1241 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 ENTPD7Q9NQZ7 604 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 CYP26B1Q9NR63 512 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 AAASQ9NRG9 546 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 PIN4Q9Y237 131 aaKnown RBP12.83□□□□□ -0.36
CPNE3-210ENST00000621245 FAM50BQ9Y247 325 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 HCN4Q9Y3Q4 1203 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 CFAP54Q96N23 3096 aa12.83□□□□□ -0.36
CPNE3-210ENST00000621245 CCDC194A0A1B0GVG4 234 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 LOC730098B7Z3J9 87 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 ALADP13716 330 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 SP100P23497 879 aaPredicted RBP12.82□□□□□ -0.36
CPNE3-210ENST00000621245 QARSP47897 775 aaKnown RBP12.82□□□□□ -0.36
CPNE3-210ENST00000621245 BCAR1P56945 870 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 PSMC5P62195 406 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 CYP4A11Q02928 519 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 CTTNQ14247 550 aaKnown RBP12.82□□□□□ -0.36
CPNE3-210ENST00000621245 HERC4Q5GLZ8 1057 aaPredicted RBP12.82□□□□□ -0.36
CPNE3-210ENST00000621245 NCAPH2Q6IBW4 605 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 PPP4R3AQ6IN85 833 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 KANK3Q6NY19 840 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 CPLX2Q6PUV4 134 aaKnown RBP12.82□□□□□ -0.36
CPNE3-210ENST00000621245 ABI1Q8IZP0 508 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 SUSD6Q92537 303 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 GTF3C6Q969F1 213 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 GCOM2Q9BZD3 368 aaPredicted RBP12.82□□□□□ -0.36
CPNE3-210ENST00000621245 S1PR5Q9H228 398 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 ORC3Q9UBD5 711 aaPredicted RBP12.82□□□□□ -0.36
CPNE3-210ENST00000621245 DNAJB4Q9UDY4 337 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 INPP5FQ9Y2H2 1132 aa12.82□□□□□ -0.36
CPNE3-210ENST00000621245 A0A087WWV3 80 aa12.81□□□□□ -0.36
CPNE3-210ENST00000621245 FECHP22830 423 aa12.81□□□□□ -0.36
CPNE3-210ENST00000621245 TECP42680 631 aa12.81□□□□□ -0.36
CPNE3-210ENST00000621245 AMHR2Q16671 573 aa12.81□□□□□ -0.36
CPNE3-210ENST00000621245 UBXN11Q5T124 520 aa12.81□□□□□ -0.36
CPNE3-210ENST00000621245 TWF2Q6IBS0 349 aaKnown RBP12.81□□□□□ -0.36
CPNE3-210ENST00000621245 ANKRD54Q6NXT1 300 aa12.81□□□□□ -0.36
CPNE3-210ENST00000621245 NSUN7Q8NE18 718 aaKnown RBP12.81□□□□□ -0.36
CPNE3-210ENST00000621245 PRPF31Q8WWY3 499 aaKnown RBP12.81□□□□□ -0.36
CPNE3-210ENST00000621245 PPP2R3CQ969Q6 453 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms