RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 KIF22Q14807 665 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 HSDL1Q3SXM5 330 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 PHLDB2Q86SQ0 1253 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 DNAAF5Q86Y56 855 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 TMEM139Q8IV31 216 aa17.08■□□□□ 0.32
CPSF1-213ENST00000620219 POP1Q99575 1024 aaKnown RBP17.08■□□□□ 0.32
CPSF1-213ENST00000620219 CDK5RAP2Q96SN8 1893 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 LRRC37AA6NMS7 1700 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 GH1P01241 217 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 NT5C1BQ96P26 610 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 JPH2Q9BR39 696 aaPredicted RBP17.07■□□□□ 0.32
CPSF1-213ENST00000620219 SMARCAD1Q9H4L7 1026 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 OLFML3Q9NRN5 406 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 TBX20Q9UMR3 447 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 FHOD1Q9Y613 1164 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 DUSP10Q9Y6W6 482 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 MYH7BA7E2Y1 1941 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 LRRC10BA6NIK2 292 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 KCNV1Q6PIU1 500 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 SESTD1Q86VW0 696 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 PRPF31Q8WWY3 499 aaKnown RBP17.07■□□□□ 0.32
CPSF1-213ENST00000620219 HAUS4Q9H6D7 363 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 HDAC6Q9UBN7 1215 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 TELO2Q9Y4R8 837 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 SNRNP35Q16560 246 aaKnown RBP17.07■□□□□ 0.32
CPSF1-213ENST00000620219 EFCAB12Q6NXP0 572 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 RDM1Q8NG50 284 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 NOX5Q96PH1 765 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 SYNCQ9H7C4 482 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 CEP72Q9P209 647 aa17.07■□□□□ 0.32
CPSF1-213ENST00000620219 NXF1Q9UBU9 619 aaKnown RBP17.07■□□□□ 0.32
CPSF1-213ENST00000620219 AGO2Q9UKV8 859 aaKnown RBP17.07■□□□□ 0.32
CPSF1-213ENST00000620219 SRGAP2O75044 1071 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 BFSP1Q12934 665 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 IQCDQ96DY2 449 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 CTTNBP2NLQ9P2B4 639 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 ITIH6Q6UXX5 1313 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 EIF3DO15371 548 aaKnown RBP eCLIP17.06■□□□□ 0.325e-6■■■□□ 17.2
CPSF1-213ENST00000620219 C6orf222P0C671 652 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-213ENST00000620219 CXCR5P32302 372 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 CYP2C19P33261 490 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 SKIDA1Q1XH10 827 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 ZNF394Q53GI3 561 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 SCARA5Q6ZMJ2 495 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 SPATA31C2B4DYI2 1134 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 CD58P19256 250 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 ZNF568Q3ZCX4 644 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 SH3D19Q5HYK7 790 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 MIIPQ5JXC2 388 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 LRRC55Q6ZSA7 311 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 ZBTB10Q96DT7 871 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 FAM84AQ96KN4 292 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-213ENST00000620219 ZNF862O60290 1169 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 N4BP1O75113 896 aaKnown RBP17.06■□□□□ 0.32
CPSF1-213ENST00000620219 MOCS3O95396 460 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 KCNA2P16389 499 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 FMO5P49326 533 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 DRAP1Q14919 205 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-213ENST00000620219 BRI3BPQ8WY22 251 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 ADPGKQ9BRR6 497 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 ZFYVE28Q9HCC9 887 aa17.06■□□□□ 0.32
CPSF1-213ENST00000620219 HOXA7P31268 230 aaPredicted RBP17.05■□□□□ 0.32
CPSF1-213ENST00000620219 TEX2Q8IWB9 1127 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 TSGA10Q9BZW7 698 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 PRDM10Q9NQV6 1147 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 ZNF507Q8TCN5 953 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 TCP11Q8WWU5 503 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 INTS2Q9H0H0 1204 aaKnown RBP17.05■□□□□ 0.32
CPSF1-213ENST00000620219 DBR1Q9UK59 544 aaKnown RBP17.05■□□□□ 0.32
CPSF1-213ENST00000620219 PCDHA13Q9Y5I0 950 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 DHX15O43143 795 aaKnown RBP17.05■□□□□ 0.32
CPSF1-213ENST00000620219 UCHL3P15374 230 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 SP2Q02086 613 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 NFX1Q12986 1120 aaKnown RBP17.05■□□□□ 0.32
CPSF1-213ENST00000620219 CHADLQ6NUI6 762 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 TMCO3Q6UWJ1 677 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 NRXN2Q9P2S2 1712 aa17.05■□□□□ 0.32
CPSF1-213ENST00000620219 SSTR3P32745 418 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-213ENST00000620219 PBX1P40424 430 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 MRPS25P82663 173 aaKnown RBP17.04■□□□□ 0.32
CPSF1-213ENST00000620219 PPFIA1Q13136 1202 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 ERGIC2Q96RQ1 377 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 PI4K2AQ9BTU6 479 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 RBAKQ9NYW8 714 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-213ENST00000620219 ERAP1Q9NZ08 941 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 SERPING1P05155 500 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 TNFAIP2Q03169 654 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 LLGL1Q15334 1064 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 TRIM59Q8IWR1 403 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 R3HDMLQ9H3Y0 253 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 TUBB4AP04350 444 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 GJB1P08034 283 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 MUTP22033 750 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 FAM193AP78312 1265 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 MMS19Q96T76 1030 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 H2AFZP0C0S5 128 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 IFI16Q16666 785 aaKnown RBP17.04■□□□□ 0.32
CPSF1-213ENST00000620219 SPRYD7Q5W111 196 aa17.04■□□□□ 0.32
CPSF1-213ENST00000620219 PDXDC1Q6P996 788 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms