RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 ZNF410Q86VK4 478 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 TMEM143Q96AN5 459 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 AGPAT3Q9NRZ7 376 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 MOXD2PA6NHM9 499 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 SLC16A4O15374 487 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 NR3C1P04150 777 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 GARTP22102 1010 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 LHX8Q68G74 356 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 HS2ST1Q7LGA3 356 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 PRPF31Q8WWY3 499 aaKnown RBP12.89□□□□□ -0.35
PDPN-211ENST00000617617 LENG1Q96BZ8 264 aaPredicted RBP12.89□□□□□ -0.35
PDPN-211ENST00000617617 BORCS6Q96GS4 357 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 RTN4Q9NQC3 1192 aaKnown RBP12.89□□□□□ -0.35
PDPN-211ENST00000617617 SUCLA2Q9P2R7 463 aaPredicted RBP12.89□□□□□ -0.35
PDPN-211ENST00000617617 ITIH6Q6UXX5 1313 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 MYADML2A6NDP7 307 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 CETN3O15182 167 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 TPM3P06753 285 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 DEKP35659 375 aaKnown RBP12.89□□□□□ -0.35
PDPN-211ENST00000617617 PBX1P40424 430 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 KRT31Q15323 416 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 NFRKBQ6P4R8 1299 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 ZPBP2Q6X784 338 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 NME8Q8N427 588 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 LMBR1Q8WVP7 490 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 HMX1Q9NP08 348 aaPredicted RBP12.89□□□□□ -0.35
PDPN-211ENST00000617617 MAGEC2Q9UBF1 373 aaPredicted RBP12.89□□□□□ -0.35
PDPN-211ENST00000617617 PTCH2Q9Y6C5 1203 aa12.89□□□□□ -0.35
PDPN-211ENST00000617617 DENND3A2RUS2 1198 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 MYL3P08590 195 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 PTENP60484 403 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 DEPTORQ8TB45 409 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 CNOT6LQ96LI5 555 aaKnown RBP12.88□□□□□ -0.35
PDPN-211ENST00000617617 FBXL18Q96ME1 805 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 TRIM5Q9C035 493 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 METTL14Q9HCE5 456 aaKnown RBP12.88□□□□□ -0.35
PDPN-211ENST00000617617 IMPACTQ9P2X3 320 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 COPB1P53618 953 aaKnown RBP12.88□□□□□ -0.35
PDPN-211ENST00000617617 SOX10P56693 466 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 UBASH3AP57075 661 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 KCNA1Q09470 495 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 MAEAQ7L5Y9 396 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 NELFCDQ8IXH7 590 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 FZD8Q9H461 694 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 PAK6Q9NQU5 681 aaPredicted RBP12.88□□□□□ -0.35
PDPN-211ENST00000617617 INTS13Q9NVM9 706 aa12.88□□□□□ -0.35
PDPN-211ENST00000617617 CCDC169A6NNP5 214 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 ECM2O94769 699 aaPredicted RBP12.87□□□□□ -0.35
PDPN-211ENST00000617617 C6orf222P0C671 652 aaPredicted RBP12.87□□□□□ -0.35
PDPN-211ENST00000617617 BEX3Q00994 111 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 POU5F1Q01860 360 aaKnown RBP12.87□□□□□ -0.35
PDPN-211ENST00000617617 ADAM9Q13443 819 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 DRP2Q13474 957 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 GNASQ5JWF2 1037 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 RNF180Q86T96 592 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 TRIM59Q8IWR1 403 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 KIAA0319LQ8IZA0 1049 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 SLC43A3Q8NBI5 491 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 PRIMPOLQ96LW4 560 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 XPO4Q9C0E2 1151 aaKnown RBP12.87□□□□□ -0.35
PDPN-211ENST00000617617 IFNKQ9P0W0 207 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 GTF2IRD1Q9UHL9 959 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 TRIM17Q9Y577 477 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 A0A1W2PQC6 194 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 LGALS16A8MUM7 142 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 SERPINC1P01008 464 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 CDK11BP21127 795 aaKnown RBP12.87□□□□□ -0.35
PDPN-211ENST00000617617 NR2F2P24468 414 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 MAN2A1Q16706 1144 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 FILIP1LQ4L180 1135 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 HS1BP3Q53T59 392 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 FAM43BQ6ZT52 329 aaPredicted RBP12.87□□□□□ -0.35
PDPN-211ENST00000617617 SRGAP1Q7Z6B7 1085 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 ZBTB8OSQ8IWT0 167 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 TRAPPC12Q8WVT3 735 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 POLD4Q9HCU8 107 aa12.87□□□□□ -0.35
PDPN-211ENST00000617617 C17orf102A2RUQ5 167 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 PMM2O15305 246 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 PROZP22891 400 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 PKN2Q16513 984 aaKnown RBP12.86□□□□□ -0.35
PDPN-211ENST00000617617 MIIPQ5JXC2 388 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 SLFN12LQ6IEE8 588 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 TAF2Q6P1X5 1199 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 SLC39A4Q6P5W5 647 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 IQCDQ96DY2 449 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 NAP1L5Q96NT1 182 aaPredicted RBP12.86□□□□□ -0.35
PDPN-211ENST00000617617 ADAMTS10Q9H324 1103 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 KIAA1586Q9HCI6 787 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 PHF24Q9UPV7 400 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 CNGA1P29973 690 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 PHKA2P46019 1235 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 MBTD1Q05BQ5 628 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 STRN3Q13033 797 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 VSTM4Q8IW00 320 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 MAP7D2Q96T17 732 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 TUBGCP2Q9BSJ2 902 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.86□□□□□ -0.35
PDPN-211ENST00000617617 IFT122Q9HBG6 1241 aa12.86□□□□□ -0.35
PDPN-211ENST00000617617 K7ERI5 159 aa12.85□□□□□ -0.35
PDPN-211ENST00000617617 PSMC2P35998 433 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms