RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 VAV3Q9UKW4 847 aa14.11□□□□□ -0.15
UPF1-208ENST00000600012 DDX39AO00148 427 aaKnown RBP14.1□□□□□ -0.15
UPF1-208ENST00000600012 CCNE2O96020 404 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 UBA7P41226 1012 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 SPIRE1Q08AE8 756 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 ZRSR1Q15695 479 aaKnown RBP14.1□□□□□ -0.15
UPF1-208ENST00000600012 HERC4Q5GLZ8 1057 aaPredicted RBP14.1□□□□□ -0.15
UPF1-208ENST00000600012 ABHD15Q6UXT9 468 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 ADGRD2Q7Z7M1 963 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 EFHBQ8N7U6 833 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 RASSF8Q8NHQ8 419 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 SNX29Q8TEQ0 813 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 POF1BQ8WVV4 589 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 MSLNLQ96KJ4 702 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 PLIN2Q99541 437 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 MMTAG2Q9BU76 263 aaKnown RBP14.1□□□□□ -0.15
UPF1-208ENST00000600012 RAB34Q9BZG1 259 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 CCSER1Q9C0I3 900 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 KCNH6Q9H252 994 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 TNMDQ9H2S6 317 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 TMX1Q9H3N1 280 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 ERVK-5Q9HDB9 667 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 C1orf112Q9NSG2 853 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 GINS2Q9Y248 185 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 PCDHB7Q9Y5E2 793 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 TECTAO75443 2155 aa14.1□□□□□ -0.15
UPF1-208ENST00000600012 SYCE3A1L190 88 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 IPO5O00410 1097 aaKnown RBP14.09□□□□□ -0.15
UPF1-208ENST00000600012 CHMP2AO43633 222 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 ACTN4O43707 911 aaKnown RBP14.09□□□□□ -0.15
UPF1-208ENST00000600012 GAS7O60861 476 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 RPS6KA5O75582 802 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 PSMD10O75832 226 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 EYA4O95677 639 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 GATMP50440 423 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 UBE3AQ05086 875 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 PDIA5Q14554 519 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 LONRF3Q496Y0 759 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 ZNF484Q5JVG2 852 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 MIS18BP1Q6P0N0 1132 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 PDXDC2PQ6P474 469 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 KRBA2Q6ZNG9 492 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 CCDC60Q8IWA6 550 aaPredicted RBP14.09□□□□□ -0.15
UPF1-208ENST00000600012 KIAA0319LQ8IZA0 1049 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 SMRP1Q8NCR6 262 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 TEKT3Q9BXF9 490 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 ZNF302Q9NR11 478 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 AAASQ9NRG9 546 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 DISC1Q9NRI5 854 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 PCDHB12Q9Y5F1 795 aa14.09□□□□□ -0.15
UPF1-208ENST00000600012 FSD2A1L4K1 749 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 DENND3A2RUS2 1198 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 EML1O00423 815 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 GPR182O15218 404 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 MGEA5O60502 916 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 NRIP1P48552 1158 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 COASYQ13057 564 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 E2F4Q16254 413 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 SPOUT1Q5T280 376 aaKnown RBP14.08□□□□□ -0.16
UPF1-208ENST00000600012 KRT79Q5XKE5 535 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 SLC24A5Q71RS6 500 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 RNF135Q8IUD6 432 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 CKAP2LQ8IYA6 745 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 CNNM3Q8NE01 707 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 LRRC15Q8TF66 581 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 TMEM40Q8WWA1 233 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 TIGD1Q96MW7 591 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 PNMA5Q96PV4 448 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 ADAM2Q99965 735 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 ANP32EQ9BTT0 268 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 UNC45AQ9H3U1 944 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 RGS18Q9NS28 235 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 CLEC1BQ9P126 229 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 MUTYHQ9UIF7 546 aa14.08□□□□□ -0.16
UPF1-208ENST00000600012 NOC2LQ9Y3T9 749 aaKnown RBP14.08□□□□□ -0.16
UPF1-208ENST00000600012 ARID2Q68CP9 1835 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 ZBTB42B2RXF5 422 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 C9IYK1 514 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 DHX15O43143 795 aaKnown RBP14.07□□□□□ -0.16
UPF1-208ENST00000600012 PRR29P0C7W0 189 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 PLCG1P19174 1290 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 IBSPP21815 317 aaPredicted RBP14.07□□□□□ -0.16
UPF1-208ENST00000600012 CCT6AP40227 531 aaKnown RBP14.07□□□□□ -0.16
UPF1-208ENST00000600012 STAT6P42226 847 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 CRYBB1P53674 252 aaPredicted RBP14.07□□□□□ -0.16
UPF1-208ENST00000600012 PPP2R5CQ13362 524 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 RRAGBQ5VZM2 374 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 SWSAP1Q6NVH7 229 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 HFE2Q6ZVN8 426 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 GRAMD1CQ8IYS0 662 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 BBXQ8WY36 941 aaPredicted RBP14.07□□□□□ -0.16
UPF1-208ENST00000600012 ERCC4Q92889 916 aaPredicted RBP14.07□□□□□ -0.16
UPF1-208ENST00000600012 CALML4Q96GE6 196 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 RIT2Q99578 217 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 TLE6Q9H808 572 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 CDHR5Q9HBB8 845 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 TBC1D22BQ9NU19 505 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 CCDC39Q9UFE4 941 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 TCEAL9Q9UHQ7 104 aa14.07□□□□□ -0.16
UPF1-208ENST00000600012 ST3GAL5Q9UNP4 418 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms