RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SMARCAL1Q9NZC9 954 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 EHD2Q9NZN4 543 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 NAGPAQ9UK23 515 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 USP20Q9Y2K6 914 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 SYNGAP1Q96PV0 1343 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 EVI5O60447 810 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 SUPT20HL2P0C7V6 817 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 NAP1L1P55209 391 aaKnown RBP15.76■□□□□ 0.11
VRK3-217ENST00000599538 DMP1Q13316 513 aaPredicted RBP15.76■□□□□ 0.11
VRK3-217ENST00000599538 NAB2Q15742 525 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 MTERF2Q49AM1 385 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 TMCO3Q6UWJ1 677 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 CREG2Q8IUH2 290 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 MSANTD4Q8NCY6 345 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 TLR10Q9BXR5 811 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 KMT5AQ9NQR1 393 aa15.76■□□□□ 0.11
VRK3-217ENST00000599538 ARGLU1Q9NWB6 273 aaPredicted RBP15.76■□□□□ 0.11
VRK3-217ENST00000599538 DDX3XO00571 662 aaKnown RBP eCLIP15.75■□□□□ 0.113e-12■■□□□ 11.9
VRK3-217ENST00000599538 STAM2O75886 525 aa15.75■□□□□ 0.11
VRK3-217ENST00000599538 CNGA1P29973 690 aa15.75■□□□□ 0.11
VRK3-217ENST00000599538 IRX3P78415 501 aaPredicted RBP15.75■□□□□ 0.11
VRK3-217ENST00000599538 PPATQ06203 517 aa15.75■□□□□ 0.11
VRK3-217ENST00000599538 TTLL12Q14166 644 aaPredicted RBP15.75■□□□□ 0.11
VRK3-217ENST00000599538 Q3C1V9 767 aa15.75■□□□□ 0.11
VRK3-217ENST00000599538 INTS8Q75QN2 995 aaKnown RBP15.75■□□□□ 0.11
VRK3-217ENST00000599538 TAS1R3Q7RTX0 852 aa15.75■□□□□ 0.11
VRK3-217ENST00000599538 NOX5Q96PH1 765 aa15.75■□□□□ 0.11
VRK3-217ENST00000599538 FAM53CQ9NYF3 392 aa15.75■□□□□ 0.11
VRK3-217ENST00000599538 OGFRQ9NZT2 677 aa15.75■□□□□ 0.11
VRK3-217ENST00000599538 IGSF9BQ9UPX0 1349 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 PALMO75781 387 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 SASH3O75995 380 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 KRT13P13646 458 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 UBA1P22314 1058 aaKnown RBP15.74■□□□□ 0.11
VRK3-217ENST00000599538 ICAM3P32942 547 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 ARHGAP44Q17R89 818 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 ALKBH5Q6P6C2 394 aaKnown RBP15.74■□□□□ 0.11
VRK3-217ENST00000599538 ERO1BQ86YB8 467 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 MAP4K3Q8IVH8 894 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 ARHGEF19Q8IW93 802 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 LNX1Q8TBB1 728 aaPredicted RBP15.74■□□□□ 0.11
VRK3-217ENST00000599538 TMEM174Q8WUU8 243 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 POP1Q99575 1024 aaKnown RBP15.74■□□□□ 0.11
VRK3-217ENST00000599538 NTPCRQ9BSD7 190 aaKnown RBP15.74■□□□□ 0.11
VRK3-217ENST00000599538 STK33Q9BYT3 514 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 APEX2Q9UBZ4 518 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 NENFQ9UMX5 172 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 SPDYE5A6NIY4 337 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 POTEB2H3BUK9 544 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 FTCDO95954 541 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 PGK2P07205 417 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 SOX5P35711 763 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 STAT1P42224 750 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 SMTNP53814 917 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 VSNL1P62760 191 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 MOGSQ13724 837 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 MIS18BP1Q6P0N0 1132 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 ANKRD13AQ8IZ07 590 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 RNF10Q8N5U6 811 aaKnown RBP15.74■□□□□ 0.11
VRK3-217ENST00000599538 PROCA1Q8NCQ7 364 aaPredicted RBP15.74■□□□□ 0.11
VRK3-217ENST00000599538 KIFAP3Q92845 792 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 ELMO3Q96BJ8 720 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 FAM84AQ96KN4 292 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 ALS2CR12Q96Q35 445 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 OSBPL9Q96SU4 736 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 GOLPH3Q9H4A6 298 aa15.74■□□□□ 0.11
VRK3-217ENST00000599538 PACSIN2Q9UNF0 486 aaPredicted RBP15.74■□□□□ 0.11
VRK3-217ENST00000599538 BZW2Q9Y6E2 419 aaKnown RBP15.74■□□□□ 0.11
VRK3-217ENST00000599538 DGAT1O75907 488 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 ATG7O95352 703 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 TBC1D8O95759 1140 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 EDNRBP24530 442 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 C2orf54Q08AI8 447 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 KAT5Q92993 513 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 TMEM143Q96AN5 459 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 PCYT2Q99447 389 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 TMEM117Q9H0C3 514 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 POLR3FQ9H1D9 316 aaPredicted RBP15.73■□□□□ 0.11
VRK3-217ENST00000599538 RAB21Q9UL25 225 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 MAFBQ9Y5Q3 323 aaPredicted RBP15.73■□□□□ 0.11
VRK3-217ENST00000599538 GSTTP1A0A1W2PQM5 241 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 FOXN3O00409 490 aaPredicted RBP15.73■□□□□ 0.11
VRK3-217ENST00000599538 EPHX2P34913 555 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 DNA2P51530 1060 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 SNRNP35Q16560 246 aaKnown RBP15.73■□□□□ 0.11
VRK3-217ENST00000599538 EPC2Q52LR7 807 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 XKR3Q5GH77 459 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 GLYCTKQ8IVS8 523 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 SPIRE2Q8WWL2 714 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 CCDC127Q96BQ5 260 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 OPTNQ96CV9 577 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 FGD4Q96M96 766 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 ZNF302Q9NR11 478 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 ST7Q9NRC1 585 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 TOPORSQ9NS56 1045 aaPredicted RBP15.73■□□□□ 0.11
VRK3-217ENST00000599538 RBPJLQ9UBG7 517 aa15.73■□□□□ 0.11
VRK3-217ENST00000599538 GRID2IPA4D2P6 1211 aa15.72■□□□□ 0.11
VRK3-217ENST00000599538 FARP2O94887 1054 aaPredicted RBP15.72■□□□□ 0.11
VRK3-217ENST00000599538 FERP16591 822 aa15.72■□□□□ 0.11
VRK3-217ENST00000599538 LY6KQ17RY6 165 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms