RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 GLB1LQ6UWU2 654 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 SLC39A11Q8N1S5 342 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 TMEM143Q96AN5 459 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 PGBD4Q96DM1 585 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 TMEM169Q96HH4 297 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 DYDC2Q96IM9 177 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 CCDC43Q96MW1 224 aaKnown RBP10.95□□□□□ -0.66
VRK3-216ENST00000599342 MTRQ99707 1265 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 DHX33Q9H6R0 707 aaKnown RBP10.95□□□□□ -0.66
VRK3-216ENST00000599342 ZSWIM4Q9H7M6 989 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 BMP2KQ9NSY1 1161 aaPredicted RBP10.95□□□□□ -0.66
VRK3-216ENST00000599342 AGPAT5Q9NUQ2 364 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 RGL1Q9NZL6 768 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 WRAP73Q9P2S5 460 aaPredicted RBP10.95□□□□□ -0.66
VRK3-216ENST00000599342 INPP5FQ9Y2H2 1132 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 USP15Q9Y4E8 981 aaPredicted RBP10.95□□□□□ -0.66
VRK3-216ENST00000599342 FAM205CA6NFA0 338 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 NEMFO60524 1076 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 ERLIN2O94905 339 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 SRGAP2CP0DJJ0 459 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 FDPSP14324 419 aaKnown RBP10.94□□□□□ -0.66
VRK3-216ENST00000599342 TECP42680 631 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 FOSBP53539 338 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 BCAR1P56945 870 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 RBM10P98175 930 aaKnown RBP10.94□□□□□ -0.66
VRK3-216ENST00000599342 LONRF3Q496Y0 759 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 LLGL2Q6P1M3 1020 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 SRGAP1Q7Z6B7 1085 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 RNF135Q8IUD6 432 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 TPH2Q8IWU9 490 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 DIS3L2Q8IYB7 885 aaKnown RBP10.94□□□□□ -0.66
VRK3-216ENST00000599342 ZNF579Q8NAF0 562 aaKnown RBP10.94□□□□□ -0.66
VRK3-216ENST00000599342 TMEM87AQ8NBN3 555 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 RNF149Q8NC42 400 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 NSUN7Q8NE18 718 aaKnown RBP10.94□□□□□ -0.66
VRK3-216ENST00000599342 VN1R2Q8NFZ6 395 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 URGCPQ8TCY9 931 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 TNFRSF25Q93038 417 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 LPPQ93052 612 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 IFT122Q9HBG6 1241 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 MUTYHQ9UIF7 546 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 PCDHA12Q9UN75 941 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 ARIH1Q9Y4X5 557 aaPredicted RBP10.94□□□□□ -0.66
VRK3-216ENST00000599342 MYO7AQ13402 2215 aa10.94□□□□□ -0.66
VRK3-216ENST00000599342 NCOR1O75376 2440 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 HIDE1A8MVS5 230 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 NT5C1B-RDH14C9J2C7 533 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 ASAP2O43150 1006 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 JAK2O60674 1132 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 ZNF623O75123 536 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 SPIRE1Q08AE8 756 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 LAMTOR4Q0VGL1 99 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 SAFBQ15424 915 aaKnown RBP eCLIP10.93□□□□□ -0.66
VRK3-216ENST00000599342 HERC4Q5GLZ8 1057 aaPredicted RBP10.93□□□□□ -0.66
VRK3-216ENST00000599342 NOMO2Q5JPE7 1267 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 ANKRD54Q6NXT1 300 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 TMEM184AQ6ZMB5 413 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 FERMT3Q86UX7 667 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 PRPF31Q8WWY3 499 aaKnown RBP10.93□□□□□ -0.66
VRK3-216ENST00000599342 CASP10Q92851 521 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 EIF2AK1Q9BQI3 630 aaKnown RBP10.93□□□□□ -0.66
VRK3-216ENST00000599342 PHF7Q9BWX1 381 aaPredicted RBP10.93□□□□□ -0.66
VRK3-216ENST00000599342 GBP3Q9H0R5 595 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 TTC12Q9H892 705 aaPredicted RBP10.93□□□□□ -0.66
VRK3-216ENST00000599342 TBC1D13Q9NVG8 400 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 PCDHB2Q9Y5E7 798 aa10.93□□□□□ -0.66
VRK3-216ENST00000599342 CNTNAP2Q9UHC6 1331 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.92□□□□□ -0.66
VRK3-216ENST00000599342 BTBD18B2RXH4 712 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 HOXB8P17481 243 aaPredicted RBP10.92□□□□□ -0.66
VRK3-216ENST00000599342 TXKP42681 527 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 NCBP1Q09161 790 aaKnown RBP10.92□□□□□ -0.66
VRK3-216ENST00000599342 KCNC3Q14003 757 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 GIT2Q14161 759 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 TFDP1Q14186 410 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 MXD4Q14582 209 aaPredicted RBP10.92□□□□□ -0.66
VRK3-216ENST00000599342 CBX2Q14781 532 aaPredicted RBP10.92□□□□□ -0.66
VRK3-216ENST00000599342 TPRNQ4KMQ1 711 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 VPS52Q8N1B4 723 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 MRPL43Q8N983 215 aaKnown RBP10.92□□□□□ -0.66
VRK3-216ENST00000599342 RPGRIP1Q96KN7 1286 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 FAM193BQ96PV7 902 aaPredicted RBP10.92□□□□□ -0.66
VRK3-216ENST00000599342 NRDE2Q9H7Z3 1164 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 RSAD1Q9HA92 442 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 HCFC2Q9Y5Z7 792 aa10.92□□□□□ -0.66
VRK3-216ENST00000599342 C2orf71A6NGG8 1288 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 MEIS3P2A8K0S8 358 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 LOC730098B7Z3J9 87 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 ZBTB39O15060 712 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 OFD1O75665 1012 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 DGAT1O75907 488 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 SLITRK3O94933 977 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 CXCL14O95715 111 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 GALTP07902 379 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 AXLP30530 894 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 PCBP1Q15365 356 aaKnown RBP eCLIP10.91□□□□□ -0.66
VRK3-216ENST00000599342 CES5AQ6NT32 575 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 NOTUMQ6P988 496 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 DDX53Q86TM3 631 aaKnown RBP10.91□□□□□ -0.66
VRK3-216ENST00000599342 CNNM3Q8NE01 707 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms