RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 KIFC3Q9BVG8 833 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 GBP3Q9H0R5 595 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 KCTD10Q9H3F6 313 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 THAP9Q9H5L6 903 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 FANCLQ9NW38 375 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 MAGEC2Q9UBF1 373 aaPredicted RBP16.98■□□□□ 0.31
UPF1-206ENST00000598471 GTF2IRD1Q9UHL9 959 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 TBX20Q9UMR3 447 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 TRAF3IP3Q9Y228 551 aa16.98■□□□□ 0.31
UPF1-206ENST00000598471 RPLP2P05387 115 aaKnown RBP16.97■□□□□ 0.31
UPF1-206ENST00000598471 RPL13P26373 211 aaKnown RBP16.97■□□□□ 0.31
UPF1-206ENST00000598471 HOXC8P31273 242 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 PMS1P54277 932 aaKnown RBP16.97■□□□□ 0.31
UPF1-206ENST00000598471 FKBP3Q00688 224 aaKnown RBP16.97■□□□□ 0.31
UPF1-206ENST00000598471 PLCB2Q00722 1185 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 ZCWPW2Q504Y3 356 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 TAF2Q6P1X5 1199 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 MAP4K3Q8IVH8 894 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 RNF149Q8NC42 400 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 NLRP4Q96MN2 994 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 CEP63Q96MT8 703 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 SCLT1Q96NL6 688 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 DEFB118Q96PH6 123 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 MED15Q96RN5 788 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 TMEM134Q9H6X4 195 aa16.97■□□□□ 0.31
UPF1-206ENST00000598471 ADGRA3Q8IWK6 1321 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 FRMPD3Q5JV73 1810 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 K7ERI5 159 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 DNM1LO00429 736 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 SRGAP2CP0DJJ0 459 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 ADAM17P78536 824 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 NFIL3Q16649 462 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 CDCA2Q69YH5 1023 aaPredicted RBP16.96■□□□□ 0.31
UPF1-206ENST00000598471 RSPH3Q86UC2 560 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 ZNF410Q86VK4 478 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 ZBTB10Q96DT7 871 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 BICD1Q96G01 975 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 DUSP9Q99956 384 aaKnown RBP16.96■□□□□ 0.31
UPF1-206ENST00000598471 SRRTQ9BXP5 876 aaKnown RBP16.96■□□□□ 0.31
UPF1-206ENST00000598471 SEZ6LQ9BYH1 1024 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 NFKBIZQ9BYH8 718 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 FAM49AQ9H0Q0 323 aaPredicted RBP16.96■□□□□ 0.31
UPF1-206ENST00000598471 PHF24Q9UPV7 400 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 SCN10AQ9Y5Y9 1956 aa16.96■□□□□ 0.31
UPF1-206ENST00000598471 ZMYM2Q9UBW7 1377 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 CETN3O15182 167 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 TREHO43280 583 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 GNA14O95837 355 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 VTNP04004 478 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 HOXD13P35453 343 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 KCNA1Q09470 495 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 ITGA7Q13683 1181 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 CDKAL1Q5VV42 579 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 KSR1Q8IVT5 923 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 KIAA0319LQ8IZA0 1049 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 NME8Q8N427 588 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 NLRP7Q8WX94 980 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 STARD7Q9NQZ5 370 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 SAMSN1Q9NSI8 373 aaKnown RBP16.95■□□□□ 0.3
UPF1-206ENST00000598471 OGDHLQ9ULD0 1010 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 KAT6AQ92794 2004 aa16.95■□□□□ 0.3
UPF1-206ENST00000598471 A0A0U1RQG5 324 aaPredicted RBP16.94■□□□□ 0.3
UPF1-206ENST00000598471 A0A1W2PQ45 241 aaPredicted RBP16.94■□□□□ 0.3
UPF1-206ENST00000598471 A0A1W2PQY0 241 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 HNRNPDLO14979 420 aaKnown RBP16.94■□□□□ 0.3
UPF1-206ENST00000598471 TGFB1I1O43294 461 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 SERPINC1P01008 464 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 NR3C1P04150 777 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 TPM3P06753 285 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 TPM2P07951 284 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 ZNF18P17022 549 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 EN2P19622 333 aaPredicted RBP16.94■□□□□ 0.3
UPF1-206ENST00000598471 NR2F2P24468 414 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 EEF1GP26641 437 aaKnown RBP16.94■□□□□ 0.3
UPF1-206ENST00000598471 LIG4P49917 911 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 GPC3P51654 580 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 PTENP60484 403 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 ADAM9Q13443 819 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 MYBPC2Q14324 1141 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 HSP90AA2PQ14568 343 aaPredicted RBP16.94■□□□□ 0.3
UPF1-206ENST00000598471 MAPK6Q16659 721 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 SARM1Q6SZW1 724 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 IFNLR1Q8IU57 520 aaPredicted RBP16.94■□□□□ 0.3
UPF1-206ENST00000598471 PPP1R13LQ8WUF5 828 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 CTAGE1Q96RT6 745 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 TMEM106CQ9BVX2 250 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 AGPAT3Q9NRZ7 376 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 HTTP42858 3142 aa16.94■□□□□ 0.3
UPF1-206ENST00000598471 KCNJ18B7U540 433 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 INO80B-WBP1J3KQ70 363 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 M0QZ92 97 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 CBFA2T2O43439 604 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 PRKCBP05771 671 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 GJB1P08034 283 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 NLRP11P59045 1033 aaKnown RBP16.93■□□□□ 0.3
UPF1-206ENST00000598471 KCNJ12Q14500 433 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 HSP90AA4PQ58FG1 418 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 GDF6Q6KF10 455 aaPredicted RBP16.93■□□□□ 0.3
UPF1-206ENST00000598471 ARMCX5Q6P1M9 558 aa16.93■□□□□ 0.3
UPF1-206ENST00000598471 RUFY4Q6ZNE9 571 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms