RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.48■□□□□ 0.23
UPF1-204ENST00000596842 SLC12A6Q9UHW9 1150 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 K7ENM7 598 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 BBOX1O75936 387 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 DLG4P78352 724 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 LRIG3Q6UXM1 1119 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 POP1Q99575 1024 aaKnown RBP16.48■□□□□ 0.23
UPF1-204ENST00000596842 FAM118BQ9BPY3 351 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 TRIM6Q9C030 488 aaPredicted RBP16.48■□□□□ 0.23
UPF1-204ENST00000596842 SLITRK6Q9H5Y7 841 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 LRRC4BQ9NT99 713 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 TBK1Q9UHD2 729 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 UTRNP46939 3433 aa16.48■□□□□ 0.23
UPF1-204ENST00000596842 CRKP46108 304 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 EGFL6Q8IUX8 553 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 FAM84AQ96KN4 292 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 COG5Q9UP83 839 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 KIF1CO43896 1103 aaKnown RBP16.47■□□□□ 0.23
UPF1-204ENST00000596842 FSBPO95073 299 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 SPIRE1Q08AE8 756 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 ABCB5Q2M3G0 1257 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 C2CD6Q53TS8 623 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 HYIQ5T013 277 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 TBC1D1Q86TI0 1168 aaPredicted RBP16.47■□□□□ 0.23
UPF1-204ENST00000596842 MRRFQ96E11 262 aaKnown RBP16.47■□□□□ 0.23
UPF1-204ENST00000596842 THOC1Q96FV9 657 aaKnown RBP16.47■□□□□ 0.23
UPF1-204ENST00000596842 ERP44Q9BS26 406 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 SYDE2Q5VT97 1194 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 HOOK3Q86VS8 718 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 FAM163AQ96GL9 167 aaPredicted RBP16.47■□□□□ 0.23
UPF1-204ENST00000596842 PAIP2Q9BPZ3 127 aaKnown RBP16.47■□□□□ 0.23
UPF1-204ENST00000596842 TACO1Q9BSH4 297 aaKnown RBP16.47■□□□□ 0.23
UPF1-204ENST00000596842 RASAL2Q9UJF2 1139 aa16.47■□□□□ 0.23
UPF1-204ENST00000596842 EMSYQ7Z589 1322 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 ARHGEF35A5YM69 484 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 KIAA1755Q5JYT7 1200 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 FMNL3Q8IVF7 1028 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 RPUSD2Q8IZ73 545 aaKnown RBP16.46■□□□□ 0.23
UPF1-204ENST00000596842 XPO6Q96QU8 1125 aaKnown RBP16.46■□□□□ 0.23
UPF1-204ENST00000596842 TDRD3Q9H7E2 651 aaKnown RBP16.46■□□□□ 0.23
UPF1-204ENST00000596842 TCRBV7S2A1N4TA0A589 114 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 MYBL1P10243 752 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 GDAP1Q8TB36 358 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 CHMP6Q96FZ7 201 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 HES6Q96HZ4 224 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 COL14A1Q05707 1796 aaKnown RBP16.46■□□□□ 0.23
UPF1-204ENST00000596842 NAV1Q8NEY1 1877 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 IGKV6D-41A0A0C4DH26 115 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 EYA4O95677 639 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 GYS1P13807 737 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 ECE1P42892 770 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 SEL1L2Q5TEA6 688 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 PHLDB3Q6NSJ2 640 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 APOBEC3HQ6NTF7 200 aaKnown RBP16.46■□□□□ 0.23
UPF1-204ENST00000596842 SLC30A5Q8TAD4 765 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 C1orf54Q8WWF1 131 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 STK33Q9BYT3 514 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 SAMD15Q9P1V8 674 aa16.46■□□□□ 0.23
UPF1-204ENST00000596842 COL22A1Q8NFW1 1626 aaPredicted RBP16.45■□□□□ 0.22
UPF1-204ENST00000596842 TMEM150BA6NC51 233 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 BMP3P12645 472 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 SNCBQ16143 134 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 LONRF1Q17RB8 773 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 EPC2Q52LR7 807 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 CCDC137Q6PK04 289 aaKnown RBP16.45■□□□□ 0.22
UPF1-204ENST00000596842 LRRC34Q8IZ02 419 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 CCDC197Q8NCU1 140 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 ZSWIM2Q8NEG5 633 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 ADAM33Q9BZ11 813 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 APEX2Q9UBZ4 518 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 ASIC3Q9UHC3 531 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 SCAF8Q9UPN6 1271 aaKnown RBP16.45■□□□□ 0.22
UPF1-204ENST00000596842 SSTR3P32745 418 aaPredicted RBP16.45■□□□□ 0.22
UPF1-204ENST00000596842 PRKCIP41743 596 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 SCTRP47872 440 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 CYB5D1Q6P9G0 228 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 ARHGAP27Q6ZUM4 889 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 ANKS4BQ8N8V4 417 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 LENG9Q96B70 501 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 MTFR1LQ9H019 292 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 HOMER2Q9NSB8 354 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 DDX60LQ5H9U9 1706 aaKnown RBP16.45■□□□□ 0.22
UPF1-204ENST00000596842 UBL4BQ8N7F7 174 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 AGPAT3Q9NRZ7 376 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 MTRF1LQ9UGC7 380 aaKnown RBP16.45■□□□□ 0.22
UPF1-204ENST00000596842 MYO3BQ8WXR4 1341 aa16.45■□□□□ 0.22
UPF1-204ENST00000596842 SLITRK3O94933 977 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 DLATP10515 647 aaKnown RBP16.44■□□□□ 0.22
UPF1-204ENST00000596842 COMTP21964 271 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 AP3B2Q13367 1082 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 ANKRD20A8PQ5CZ79 823 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 PARP9Q8IXQ6 854 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 ZKSCAN4Q969J2 545 aaPredicted RBP16.44■□□□□ 0.22
UPF1-204ENST00000596842 RNF25Q96BH1 459 aaPredicted RBP16.44■□□□□ 0.22
UPF1-204ENST00000596842 SGSM3Q96HU1 749 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 GLT8D2Q9H1C3 349 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 RPL21P46778 160 aaKnown RBP16.44■□□□□ 0.22
UPF1-204ENST00000596842 JAM2P57087 298 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 NAP1L3Q99457 506 aaPredicted RBP16.44■□□□□ 0.22
UPF1-204ENST00000596842 ZNF577Q9BSK1 485 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms