RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 PHLPP2Q6ZVD8 1323 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 DNM1LO00429 736 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 PDXKO00764 312 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 CALUO43852 315 aaPredicted RBP16.11■□□□□ 0.17
VRK3-212ENST00000596814 VTNP04004 478 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 SRGAP2CP0DJJ0 459 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 ZNF200P98182 395 aaPredicted RBP16.11■□□□□ 0.17
VRK3-212ENST00000596814 CDCA2Q69YH5 1023 aaPredicted RBP16.11■□□□□ 0.17
VRK3-212ENST00000596814 RUFY4Q6ZNE9 571 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 MAP4K3Q8IVH8 894 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 ZBTB8OSQ8IWT0 167 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 KIAA0319LQ8IZA0 1049 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 ARMC5Q96C12 935 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 FAM49AQ9H0Q0 323 aaPredicted RBP16.11■□□□□ 0.17
VRK3-212ENST00000596814 GBP3Q9H0R5 595 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 C2orf40Q9H1Z8 148 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 OGDHLQ9ULD0 1010 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 EXOC7Q9UPT5 735 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 PHF24Q9UPV7 400 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 TRAF3IP3Q9Y228 551 aa16.11■□□□□ 0.17
VRK3-212ENST00000596814 A0A1W2PQ45 241 aaPredicted RBP16.1■□□□□ 0.17
VRK3-212ENST00000596814 A0A1W2PQY0 241 aa16.1■□□□□ 0.17
VRK3-212ENST00000596814 ITGA7Q13683 1181 aa16.1■□□□□ 0.17
VRK3-212ENST00000596814 EDRF1Q3B7T1 1238 aa16.1■□□□□ 0.17
VRK3-212ENST00000596814 GDF6Q6KF10 455 aaPredicted RBP16.1■□□□□ 0.17
VRK3-212ENST00000596814 HS2ST1Q7LGA3 356 aa16.1■□□□□ 0.17
VRK3-212ENST00000596814 GOLGA5Q8TBA6 731 aa16.1■□□□□ 0.17
VRK3-212ENST00000596814 NOC3LQ8WTT2 800 aaKnown RBP16.1■□□□□ 0.17
VRK3-212ENST00000596814 TMEM134Q9H6X4 195 aa16.1■□□□□ 0.17
VRK3-212ENST00000596814 SAMSN1Q9NSI8 373 aaKnown RBP16.1■□□□□ 0.17
VRK3-212ENST00000596814 GRIN2DO15399 1336 aa16.1■□□□□ 0.17
VRK3-212ENST00000596814 K7ERI5 159 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 TGFB1I1O43294 461 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 FGFR1OPO95684 399 aaKnown RBP16.09■□□□□ 0.17
VRK3-212ENST00000596814 ZNF18P17022 549 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 PHKA2P46019 1235 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 EFNA5P52803 228 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 STRN3Q13033 797 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 HSP90AA4PQ58FG1 418 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 CDKAL1Q5VV42 579 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 TAF2Q6P1X5 1199 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 TAS1R3Q7RTX0 852 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 ZNF668Q96K58 619 aaPredicted RBP16.09■□□□□ 0.17
VRK3-212ENST00000596814 PPP1R16BQ96T49 567 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 SRRTQ9BXP5 876 aaKnown RBP16.09■□□□□ 0.17
VRK3-212ENST00000596814 THAP9Q9H5L6 903 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 STARD7Q9NQZ5 370 aa16.09■□□□□ 0.17
VRK3-212ENST00000596814 GPC3P51654 580 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 PTENP60484 403 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 FKBP3Q00688 224 aaKnown RBP16.08■□□□□ 0.17
VRK3-212ENST00000596814 PLCB2Q00722 1185 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 PTPN11Q06124 597 aaPredicted RBP16.08■□□□□ 0.17
VRK3-212ENST00000596814 POU5F1BQ06416 359 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 LRRC55Q6ZSA7 311 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 ZNF410Q86VK4 478 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 DNAJB3Q8WWF6 145 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 NLRP7Q8WX94 980 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 BICD1Q96G01 975 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 SCLT1Q96NL6 688 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 NFKBIZQ9BYH8 718 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 IKZF4Q9H2S9 585 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 AGPAT3Q9NRZ7 376 aa16.08■□□□□ 0.17
VRK3-212ENST00000596814 A0A087WZ62 844 aa16.08■□□□□ 0.16
VRK3-212ENST00000596814 A0A0U1RQG5 324 aaPredicted RBP16.08■□□□□ 0.16
VRK3-212ENST00000596814 NR3C1P04150 777 aa16.08■□□□□ 0.16
VRK3-212ENST00000596814 ATP1A3P13637 1013 aa16.08■□□□□ 0.16
VRK3-212ENST00000596814 NR2F2P24468 414 aa16.08■□□□□ 0.16
VRK3-212ENST00000596814 NLRP11P59045 1033 aaKnown RBP16.08■□□□□ 0.16
VRK3-212ENST00000596814 SNRPFP62306 86 aaKnown RBP16.08■□□□□ 0.16
VRK3-212ENST00000596814 CDC42EP1Q00587 391 aa16.08■□□□□ 0.16
VRK3-212ENST00000596814 NFIL3Q16649 462 aa16.08■□□□□ 0.16
VRK3-212ENST00000596814 FAM114A1Q8IWE2 563 aa16.08■□□□□ 0.16
VRK3-212ENST00000596814 ZC3H3Q8IXZ2 948 aaKnown RBP16.08■□□□□ 0.16
VRK3-212ENST00000596814 FDXACB1Q9BRP7 624 aaPredicted RBP16.08■□□□□ 0.16
VRK3-212ENST00000596814 CCDC113Q9H0I3 377 aa16.08■□□□□ 0.16
VRK3-212ENST00000596814 CGNQ9P2M7 1197 aaKnown RBP16.08■□□□□ 0.16
VRK3-212ENST00000596814 HNRNPDLO14979 420 aaKnown RBP16.07■□□□□ 0.16
VRK3-212ENST00000596814 CLIC2O15247 247 aa16.07■□□□□ 0.16
VRK3-212ENST00000596814 PRKCBP05771 671 aa16.07■□□□□ 0.16
VRK3-212ENST00000596814 CDK11BP21127 795 aaKnown RBP16.07■□□□□ 0.16
VRK3-212ENST00000596814 RPL13P26373 211 aaKnown RBP16.07■□□□□ 0.16
VRK3-212ENST00000596814 SPAG1Q07617 926 aa16.07■□□□□ 0.16
VRK3-212ENST00000596814 MAPK6Q16659 721 aa16.07■□□□□ 0.16
VRK3-212ENST00000596814 IFNLR1Q8IU57 520 aaPredicted RBP16.07■□□□□ 0.16
VRK3-212ENST00000596814 U2AF1L4Q8WU68 220 aaKnown RBP16.07■□□□□ 0.16
VRK3-212ENST00000596814 EEF2KMTQ96G04 330 aa16.07■□□□□ 0.16
VRK3-212ENST00000596814 CEP63Q96MT8 703 aa16.07■□□□□ 0.16
VRK3-212ENST00000596814 CRISPLD2Q9H0B8 497 aa16.07■□□□□ 0.16
VRK3-212ENST00000596814 IFT122Q9HBG6 1241 aa16.07■□□□□ 0.16
VRK3-212ENST00000596814 MAGEC2Q9UBF1 373 aaPredicted RBP16.07■□□□□ 0.16
VRK3-212ENST00000596814 INO80B-WBP1J3KQ70 363 aa16.06■□□□□ 0.16
VRK3-212ENST00000596814 CETN3O15182 167 aa16.06■□□□□ 0.16
VRK3-212ENST00000596814 SGPL1O95470 568 aa16.06■□□□□ 0.16
VRK3-212ENST00000596814 LIG4P49917 911 aa16.06■□□□□ 0.16
VRK3-212ENST00000596814 MBTD1Q05BQ5 628 aa16.06■□□□□ 0.16
VRK3-212ENST00000596814 TMEM62Q0P6H9 643 aa16.06■□□□□ 0.16
VRK3-212ENST00000596814 ADAM9Q13443 819 aa16.06■□□□□ 0.16
VRK3-212ENST00000596814 PTGISQ16647 500 aa16.06■□□□□ 0.16
VRK3-212ENST00000596814 KIZQ2M2Z5 673 aa16.06■□□□□ 0.16
VRK3-212ENST00000596814 SARM1Q6SZW1 724 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms