RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PLA2G4BP0C869 781 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 SKIP12755 728 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 PLCG1P19174 1290 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 GUCY2CP25092 1073 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 AXLP30530 894 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 NAMPTP43490 491 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 SLC12A3P55017 1021 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 MBTD1Q05BQ5 628 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 NCBP1Q09161 790 aaKnown RBP13.17□□□□□ -0.3
LIG3-213ENST00000590630 KARSQ15046 597 aaKnown RBP13.17□□□□□ -0.3
LIG3-213ENST00000590630 CDCA2Q69YH5 1023 aaPredicted RBP13.17□□□□□ -0.3
LIG3-213ENST00000590630 TWF2Q6IBS0 349 aaKnown RBP13.17□□□□□ -0.3
LIG3-213ENST00000590630 C1orf186Q6ZWK4 172 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 ZBTB8OSQ8IWT0 167 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 KCNG4Q8TDN1 519 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 SYMPKQ92797 1274 aaKnown RBP13.17□□□□□ -0.3
LIG3-213ENST00000590630 ZNF689Q96CS4 500 aaPredicted RBP13.17□□□□□ -0.3
LIG3-213ENST00000590630 EPSTI1Q96J88 318 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 IFT74Q96LB3 600 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 CLIC6Q96NY7 704 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 TGS1Q96RS0 853 aaKnown RBP13.17□□□□□ -0.3
LIG3-213ENST00000590630 CDX2Q99626 313 aaPredicted RBP13.17□□□□□ -0.3
LIG3-213ENST00000590630 RUSC1Q9BVN2 902 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 C2orf40Q9H1Z8 148 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 C17orf75Q9HAS0 396 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 CCDC39Q9UFE4 941 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 ATP6V1DQ9Y5K8 247 aa13.17□□□□□ -0.3
LIG3-213ENST00000590630 COL4A4P53420 1690 aaPredicted RBP13.16□□□□□ -0.3
LIG3-213ENST00000590630 HOXA2O43364 376 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 HIP1RO75146 1068 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 EOMESO95936 686 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 HOXA11P31270 313 aaPredicted RBP13.16□□□□□ -0.3
LIG3-213ENST00000590630 RAB27AP51159 221 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 ERVK-21P61565 698 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 FOXD4L6Q3SYB3 417 aaPredicted RBP13.16□□□□□ -0.3
LIG3-213ENST00000590630 SPECC1Q5M775 1068 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 FOXD4L3Q6VB84 417 aaPredicted RBP13.16□□□□□ -0.3
LIG3-213ENST00000590630 USP49Q70CQ1 688 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 ECHDC2Q86YB7 292 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 CMTR2Q8IYT2 770 aaKnown RBP13.16□□□□□ -0.3
LIG3-213ENST00000590630 FIBCD1Q8N539 461 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 DEPTORQ8TB45 409 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 BSNDQ8WZ55 320 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 CCDC51Q96ER9 411 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 PRIMPOLQ96LW4 560 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 SAMD11Q96NU1 681 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 STK17AQ9UEE5 414 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 DAXXQ9UER7 740 aaPredicted RBP13.16□□□□□ -0.3
LIG3-213ENST00000590630 ZDHHC9Q9Y397 364 aa13.16□□□□□ -0.3
LIG3-213ENST00000590630 TSPAN1O60635 241 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 IBSPP21815 317 aaPredicted RBP13.15□□□□□ -0.3
LIG3-213ENST00000590630 EFNA5P52803 228 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 DNM1Q05193 864 aaKnown RBP13.15□□□□□ -0.3
LIG3-213ENST00000590630 MAPK7Q13164 816 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 DMP1Q13316 513 aaPredicted RBP13.15□□□□□ -0.3
LIG3-213ENST00000590630 BTG3Q14201 252 aaPredicted RBP13.15□□□□□ -0.3
LIG3-213ENST00000590630 MAPK6Q16659 721 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 FAM187BQ17R55 369 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 NOTUMQ6P988 496 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 PPP4R3CPQ6ZMV5 832 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 DAW1Q8N136 415 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 ARNTL2Q8WYA1 636 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 RSPH1Q8WYR4 309 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 LARP4BQ92615 738 aaKnown RBP13.15□□□□□ -0.3
LIG3-213ENST00000590630 RAD54LQ92698 747 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 GAS2L1Q99501 681 aaPredicted RBP13.15□□□□□ -0.3
LIG3-213ENST00000590630 PRDM12Q9H4Q4 367 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 BLOC1S4Q9NUP1 217 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 FAM105AQ9NUU6 356 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 PRMT7Q9NVM4 692 aaPredicted RBP13.15□□□□□ -0.3
LIG3-213ENST00000590630 KCNG1Q9UIX4 513 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 STXBP5LQ9Y2K9 1186 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 RWDD3Q9Y3V2 267 aa13.15□□□□□ -0.3
LIG3-213ENST00000590630 PHLPP2Q6ZVD8 1323 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 CUTAO60888 179 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 ZNF623O75123 536 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 FOSL2P15408 326 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 DDIT3P35638 169 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 AMHR2Q16671 573 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 RRAGBQ5VZM2 374 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 CCDC73Q6ZRK6 1079 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 ZNF598Q86UK7 904 aaKnown RBP13.14□□□□□ -0.31
LIG3-213ENST00000590630 GPBP1Q86WP2 473 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 ABI1Q8IZP0 508 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 LRRC15Q8TF66 581 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 MYLIPQ8WY64 445 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 CLP1Q92989 425 aaKnown RBP13.14□□□□□ -0.31
LIG3-213ENST00000590630 CCDC113Q9H0I3 377 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 FZD8Q9H461 694 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 CERS4Q9HA82 394 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 ODF2LQ9ULJ1 636 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 UNC80Q8N2C7 3258 aa13.14□□□□□ -0.31
LIG3-213ENST00000590630 CNTNAP2Q9UHC6 1331 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 PRRC2BQ5JSZ5 2229 aaKnown RBP13.13□□□□□ -0.31
LIG3-213ENST00000590630 CCDC169A6NNP5 214 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 FGFR1P11362 822 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 ATF7P17544 494 aaPredicted RBP13.13□□□□□ -0.31
LIG3-213ENST00000590630 ARF4P18085 180 aaPredicted RBP13.13□□□□□ -0.31
LIG3-213ENST00000590630 NPTX2P47972 431 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 ME1P48163 572 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms