RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 SEL1LQ9UBV2 794 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 SEPT9Q9UHD8 586 aaPredicted RBP11.52□□□□□ -0.56
VPS4B-204ENST00000589604 TBX21Q9UL17 535 aa11.52□□□□□ -0.56
VPS4B-204ENST00000589604 ARIH1Q9Y4X5 557 aaPredicted RBP11.52□□□□□ -0.56
VPS4B-204ENST00000589604 LAMA2P24043 3122 aaKnown RBP11.52□□□□□ -0.57
VPS4B-204ENST00000589604 SIP14410 1827 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 LRRC10BA6NIK2 292 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 HBP1O60381 514 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 TBCAO75347 108 aaKnown RBP11.52□□□□□ -0.57
VPS4B-204ENST00000589604 PPP1R37O75864 691 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 FAM13AO94988 1023 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 C22orf31O95567 290 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 NMT1P30419 496 aaKnown RBP11.52□□□□□ -0.57
VPS4B-204ENST00000589604 PTPN11Q06124 597 aaPredicted RBP11.52□□□□□ -0.57
VPS4B-204ENST00000589604 MTERF2Q49AM1 385 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 MTHFD1LQ6UB35 978 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 ZNF720Q7Z2F6 126 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 SERINC5Q86VE9 423 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 ANP32BQ92688 251 aaKnown RBP11.52□□□□□ -0.57
VPS4B-204ENST00000589604 MRFAP1L1Q96HT8 127 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 CEP170P1Q96L14 293 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 TOX2Q96NM4 488 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 TIPINQ9BVW5 301 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 XPO4Q9C0E2 1151 aaKnown RBP11.52□□□□□ -0.57
VPS4B-204ENST00000589604 GPRC5CQ9NQ84 441 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 IFNKQ9P0W0 207 aa11.52□□□□□ -0.57
VPS4B-204ENST00000589604 NRCAMQ92823 1304 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 SYN1P17600 705 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 KLRC1P26715 233 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 CDC25BP30305 580 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 TPM4P67936 248 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 KCNA1Q09470 495 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 DRP2Q13474 957 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 LRRC55Q6ZSA7 311 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 MAEAQ7L5Y9 396 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 ZC3H3Q8IXZ2 948 aaKnown RBP11.51□□□□□ -0.57
VPS4B-204ENST00000589604 MYCT1Q8N699 235 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 LINC01465Q8N7H1 131 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 SRRTQ9BXP5 876 aaKnown RBP11.51□□□□□ -0.57
VPS4B-204ENST00000589604 DHX33Q9H6R0 707 aaKnown RBP11.51□□□□□ -0.57
VPS4B-204ENST00000589604 LIMA1Q9UHB6 759 aaKnown RBP11.51□□□□□ -0.57
VPS4B-204ENST00000589604 ZMYM2Q9UBW7 1377 aa11.51□□□□□ -0.57
VPS4B-204ENST00000589604 LTBP2Q14767 1821 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 BICDL2A1A5D9 508 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 DCDC2CA8MYV0 355 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 EIF3DO15371 548 aaKnown RBP eCLIP11.5□□□□□ -0.57
VPS4B-204ENST00000589604 PRPF6O94906 941 aaKnown RBP11.5□□□□□ -0.57
VPS4B-204ENST00000589604 CLTBP09497 229 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 MAPTP10636 758 aaKnown RBP11.5□□□□□ -0.57
VPS4B-204ENST00000589604 PLS3P13797 630 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 ZC2HC1CQ53FD0 456 aaPredicted RBP11.5□□□□□ -0.57
VPS4B-204ENST00000589604 ZNF484Q5JVG2 852 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 ODR4Q5SWX8 454 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 TRAF7Q6Q0C0 670 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.5□□□□□ -0.57
VPS4B-204ENST00000589604 NELFCDQ8IXH7 590 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 LRRC71Q8N4P6 559 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 BSNDQ8WZ55 320 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 DPF3Q92784 378 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 VWCEQ96DN2 955 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 FAM167AQ96KS9 214 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 HTATIP2Q9BUP3 242 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 NOC4LQ9BVI4 516 aaKnown RBP11.5□□□□□ -0.57
VPS4B-204ENST00000589604 IKZF4Q9H2S9 585 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 THAP9Q9H5L6 903 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 MRPL44Q9H9J2 332 aaKnown RBP11.5□□□□□ -0.57
VPS4B-204ENST00000589604 NRBP2Q9NSY0 501 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 ZMYND8Q9ULU4 1186 aaPredicted RBP11.5□□□□□ -0.57
VPS4B-204ENST00000589604 COL1A2P08123 1366 aa11.5□□□□□ -0.57
VPS4B-204ENST00000589604 IGKV6-21A0A0C4DH24 114 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 RRN3P2A6NIE6 340 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 KIAA0355O15063 1070 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 TGFB1I1O43294 461 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 EVI5O60447 810 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 DGAT1O75907 488 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 PYGBP11216 843 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 CYP2C18P33260 490 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 UBASH3AP57075 661 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 LRRC63Q05C16 580 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 GPNMBQ14956 572 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 NR1I3Q14994 352 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 KRT31Q15323 416 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 KNOP1Q1ED39 458 aaKnown RBP11.49□□□□□ -0.57
VPS4B-204ENST00000589604 TCP11X2Q5H9J9 407 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 KSR1Q8IVT5 923 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 KIAA0319LQ8IZA0 1049 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 CSGALNACT2Q8N6G5 542 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 DNAJB3Q8WWF6 145 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 EEF2KMTQ96G04 330 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 NTPCRQ9BSD7 190 aaKnown RBP11.49□□□□□ -0.57
VPS4B-204ENST00000589604 SEZ6LQ9BYH1 1024 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 PPP1R12CQ9BZL4 782 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 WNT8AQ9H1J5 351 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 ST6GALNAC4Q9H4F1 302 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 PRDM5Q9NQX1 630 aaPredicted RBP11.49□□□□□ -0.57
VPS4B-204ENST00000589604 TMEM39AQ9NV64 488 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 TRAF3IP3Q9Y228 551 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 MROH7Q68CQ1 1323 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 SCN5AQ14524 2016 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 A0A1B0GTH6 734 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms