RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FAM105AQ9NUU6 356 aa26.54■■□□□ 1.84
SHMT1-206ENST00000579558 PCDHB12Q9Y5F1 795 aa26.54■■□□□ 1.84
SHMT1-206ENST00000579558 VPS37CA5D8V6 355 aaPredicted RBP26.53■■□□□ 1.84
SHMT1-206ENST00000579558 ERLIN2O94905 339 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 CSPG5O95196 566 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 ITGB1P05556 798 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 RAB27AP51159 221 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 TFF2Q03403 129 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 POU5F1BQ06416 359 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 PADI6Q6TGC4 694 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 LRRC43Q8N309 656 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 HELQQ8TDG4 1101 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 HLA-CQ95604 372 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 NSUN3Q9H649 340 aaKnown RBP26.53■■□□□ 1.84
SHMT1-206ENST00000579558 CWH43Q9H720 699 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 KIAA1024Q9UPX6 916 aa26.53■■□□□ 1.84
SHMT1-206ENST00000579558 PP2D1A8MPX8 630 aa26.52■■□□□ 1.84
SHMT1-206ENST00000579558 INO80B-WBP1J3KQ70 363 aa26.52■■□□□ 1.84
SHMT1-206ENST00000579558 LAG3P18627 525 aa26.52■■□□□ 1.84
SHMT1-206ENST00000579558 PDCP20941 246 aa26.52■■□□□ 1.84
SHMT1-206ENST00000579558 ATG2AQ2TAZ0 1938 aa26.52■■□□□ 1.84
SHMT1-206ENST00000579558 KRT79Q5XKE5 535 aa26.52■■□□□ 1.84
SHMT1-206ENST00000579558 BRAPQ7Z569 592 aa26.52■■□□□ 1.84
SHMT1-206ENST00000579558 IFNLR1Q8IU57 520 aaPredicted RBP26.52■■□□□ 1.84
SHMT1-206ENST00000579558 COLGALT1Q8NBJ5 622 aa26.52■■□□□ 1.84
SHMT1-206ENST00000579558 DDX19AQ9NUU7 478 aaKnown RBP26.52■■□□□ 1.84
SHMT1-206ENST00000579558 K7ELQ4 463 aaPredicted RBP26.51■■□□□ 1.83
SHMT1-206ENST00000579558 HOXA11P31270 313 aaPredicted RBP26.51■■□□□ 1.83
SHMT1-206ENST00000579558 PCBP1Q15365 356 aaKnown RBP eCLIP26.51■■□□□ 1.83
SHMT1-206ENST00000579558 AAK1Q2M2I8 961 aa26.51■■□□□ 1.83
SHMT1-206ENST00000579558 LONRF3Q496Y0 759 aa26.51■■□□□ 1.83
SHMT1-206ENST00000579558 TCEAL5Q5H9L2 206 aa26.51■■□□□ 1.83
SHMT1-206ENST00000579558 LRRC55Q6ZSA7 311 aa26.51■■□□□ 1.83
SHMT1-206ENST00000579558 SPPL3Q8TCT6 385 aa26.51■■□□□ 1.83
SHMT1-206ENST00000579558 LPPQ93052 612 aa26.51■■□□□ 1.83
SHMT1-206ENST00000579558 LRRIQ4A6NIV6 560 aa26.5■■□□□ 1.83
SHMT1-206ENST00000579558 ZNF623O75123 536 aa26.5■■□□□ 1.83
SHMT1-206ENST00000579558 CYP11B2P19099 503 aa26.5■■□□□ 1.83
SHMT1-206ENST00000579558 CDC25AP30304 524 aa26.5■■□□□ 1.83
SHMT1-206ENST00000579558 MBTD1Q05BQ5 628 aa26.5■■□□□ 1.83
SHMT1-206ENST00000579558 CSPP1Q1MSJ5 1256 aa26.5■■□□□ 1.83
SHMT1-206ENST00000579558 THNSL1Q8IYQ7 743 aa26.5■■□□□ 1.83
SHMT1-206ENST00000579558 SYMPKQ92797 1274 aaKnown RBP26.5■■□□□ 1.83
SHMT1-206ENST00000579558 INTS4Q96HW7 963 aaKnown RBP26.5■■□□□ 1.83
SHMT1-206ENST00000579558 NFKBIZQ9BYH8 718 aa26.5■■□□□ 1.83
SHMT1-206ENST00000579558 BHMT2Q9H2M3 363 aa26.5■■□□□ 1.83
SHMT1-206ENST00000579558 PCDHB2Q9Y5E7 798 aa26.5■■□□□ 1.83
SHMT1-206ENST00000579558 PLXNA4Q9HCM2 1894 aa26.49■■□□□ 1.83
SHMT1-206ENST00000579558 TSPAN1O60635 241 aa26.49■■□□□ 1.83
SHMT1-206ENST00000579558 DNAJB1P25685 340 aa26.49■■□□□ 1.83
SHMT1-206ENST00000579558 AXLP30530 894 aa26.49■■□□□ 1.83
SHMT1-206ENST00000579558 NCBP1Q09161 790 aaKnown RBP26.49■■□□□ 1.83
SHMT1-206ENST00000579558 POF1BQ8WVV4 589 aa26.49■■□□□ 1.83
SHMT1-206ENST00000579558 PGBD4Q96DM1 585 aa26.49■■□□□ 1.83
SHMT1-206ENST00000579558 MRPL9Q9BYD2 267 aaKnown RBP26.49■■□□□ 1.83
SHMT1-206ENST00000579558 VWA3AA6NCI4 1184 aa26.48■■□□□ 1.83
SHMT1-206ENST00000579558 CAMK1Q14012 370 aa26.48■■□□□ 1.83
SHMT1-206ENST00000579558 UBXN11Q5T124 520 aa26.48■■□□□ 1.83
SHMT1-206ENST00000579558 ARL6IP4Q66PJ3 421 aaKnown RBP26.48■■□□□ 1.83
SHMT1-206ENST00000579558 GLB1LQ6UWU2 654 aa26.48■■□□□ 1.83
SHMT1-206ENST00000579558 CPB2Q96IY4 423 aa26.48■■□□□ 1.83
SHMT1-206ENST00000579558 MMTAG2Q9BU76 263 aaKnown RBP26.48■■□□□ 1.83
SHMT1-206ENST00000579558 UBE2ZQ9H832 354 aaPredicted RBP26.48■■□□□ 1.83
SHMT1-206ENST00000579558 FOXD4L1Q9NU39 408 aa26.48■■□□□ 1.83
SHMT1-206ENST00000579558 DNM3Q9UQ16 869 aa26.48■■□□□ 1.83
SHMT1-206ENST00000579558 MYO7AQ13402 2215 aa26.48■■□□□ 1.83
SHMT1-206ENST00000579558 MEIS3P2A8K0S8 358 aa26.47■■□□□ 1.83
SHMT1-206ENST00000579558 FGF18O76093 207 aa26.47■■□□□ 1.83
SHMT1-206ENST00000579558 NOTUMQ6P988 496 aa26.47■■□□□ 1.83
SHMT1-206ENST00000579558 RSPH1Q8WYR4 309 aa26.47■■□□□ 1.83
SHMT1-206ENST00000579558 CCDC51Q96ER9 411 aa26.47■■□□□ 1.83
SHMT1-206ENST00000579558 ZNF558Q96NG5 402 aa26.47■■□□□ 1.83
SHMT1-206ENST00000579558 E9PMD0 336 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 EYA4O95677 639 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 SYT1P21579 422 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 KCNQ1P51787 676 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 UBE3AQ05086 875 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 ZRSR1Q15695 479 aaKnown RBP26.46■■□□□ 1.83
SHMT1-206ENST00000579558 AMHR2Q16671 573 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 KCNT2Q6UVM3 1135 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 ZBTB8OSQ8IWT0 167 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 BSNDQ8WZ55 320 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 INPP5FQ9Y2H2 1132 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 TTC28Q96AY4 2481 aa26.46■■□□□ 1.83
SHMT1-206ENST00000579558 BMP15O95972 392 aa26.45■■□□□ 1.82
SHMT1-206ENST00000579558 PBX3P40426 434 aa26.45■■□□□ 1.82
SHMT1-206ENST00000579558 NOMO2Q5JPE7 1267 aa26.45■■□□□ 1.82
SHMT1-206ENST00000579558 CDCA2Q69YH5 1023 aaPredicted RBP26.45■■□□□ 1.82
SHMT1-206ENST00000579558 MRPL10Q7Z7H8 261 aaKnown RBP26.45■■□□□ 1.82
SHMT1-206ENST00000579558 BRWD1Q9NSI6 2320 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP26.44■■□□□ 1.82
SHMT1-206ENST00000579558 B4GALT5O43286 388 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 OFD1O75665 1012 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 ARF4P18085 180 aaPredicted RBP26.44■■□□□ 1.82
SHMT1-206ENST00000579558 NCLP19338 710 aaKnown RBP26.44■■□□□ 1.82
SHMT1-206ENST00000579558 IRS1P35568 1242 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 PPM1AP35813 382 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 NAMPTP43490 491 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 PPP2R5AQ15172 486 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 AGMOQ6ZNB7 445 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms