RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 CACNA1HO95180 2353 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 DMDP11532 3685 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 TTC3P53804 2025 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 NRCAMQ92823 1304 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 KDM3AQ9Y4C1 1321 aa11.29□□□□□ -0.6
SS18-210ENST00000578700 SLC37A4O43826 429 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 DGKIO75912 1065 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 CYP3A4P08684 503 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 LINC00271P0C7V0 271 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 CD52P31358 61 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 TCF7P36402 384 aaPredicted RBP11.28□□□□□ -0.6
SS18-210ENST00000578700 ADAM17P78536 824 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 ZXDAP98168 799 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 MGAT3Q09327 533 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 PPFIA1Q13136 1202 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 CAMK1Q14012 370 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 KARSQ15046 597 aaKnown RBP11.28□□□□□ -0.6
SS18-210ENST00000578700 PRR16Q569H4 304 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 SPOUT1Q5T280 376 aaKnown RBP11.28□□□□□ -0.6
SS18-210ENST00000578700 NT5DC1Q5TFE4 455 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 HAUS3Q68CZ6 603 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 NLRX1Q86UT6 975 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 LUZP1Q86V48 1076 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 KLHL23Q8NBE8 558 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 SPPL3Q8TCT6 385 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 ERCC4Q92889 916 aaPredicted RBP11.28□□□□□ -0.6
SS18-210ENST00000578700 GLG1Q92896 1179 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 ZNF689Q96CS4 500 aaPredicted RBP11.28□□□□□ -0.6
SS18-210ENST00000578700 ZBTB10Q96DT7 871 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 PPP1R9BQ96SB3 815 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 PLVAPQ9BX97 442 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 NT5C3AQ9H0P0 336 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 FAM49AQ9H0Q0 323 aaPredicted RBP11.28□□□□□ -0.6
SS18-210ENST00000578700 PKD2L1Q9P0L9 805 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 STK17AQ9UEE5 414 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 BARX2Q9UMQ3 279 aaPredicted RBP11.28□□□□□ -0.6
SS18-210ENST00000578700 PCDHGC5Q9Y5F6 944 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 LOXHD1Q8IVV2 1947 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 ZFHX2Q9C0A1 2572 aaPredicted RBP11.28□□□□□ -0.6
SS18-210ENST00000578700 KIAA1671Q9BY89 1806 aa11.28□□□□□ -0.6
SS18-210ENST00000578700 GOLGA6L6A8MZA4 724 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 PER2O15055 1255 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 STAM2O75886 525 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 ADCY5O95622 1261 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 ITGB1P05556 798 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 CIITAP33076 1130 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 SETQ01105 290 aaPredicted RBP11.27□□□□□ -0.61
SS18-210ENST00000578700 TMEM62Q0P6H9 643 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 GRIK4Q16099 956 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 E2F4Q16254 413 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 DPCR1Q3MIW9 517 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 FBXO47Q5MNV8 452 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 TAF2Q6P1X5 1199 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 C11orf57Q6ZUT1 292 aaPredicted RBP11.27□□□□□ -0.61
SS18-210ENST00000578700 BMP8AQ7Z5Y6 402 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 RTN4RL1Q86UN2 441 aaPredicted RBP11.27□□□□□ -0.61
SS18-210ENST00000578700 SNX29Q8TEQ0 813 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 MSLNLQ96KJ4 702 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 MBOAT7Q96N66 472 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 INPP4AQ96PE3 977 aaPredicted RBP11.27□□□□□ -0.61
SS18-210ENST00000578700 TLE6Q9H808 572 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 AGO3Q9H9G7 860 aaKnown RBP11.27□□□□□ -0.61
SS18-210ENST00000578700 CLEC1BQ9P126 229 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 LRFN2Q9ULH4 789 aa11.27□□□□□ -0.61
SS18-210ENST00000578700 A0A087X0B3 334 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 PP2D1A8MPX8 630 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 IKBKBO14920 756 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 ATP9AO75110 1047 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 EYA4O95677 639 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 PLCG1P19174 1290 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 CDC25AP30304 524 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 GATMP50440 423 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 MYL5Q02045 173 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 TCF15Q12870 199 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 STIM1Q13586 685 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 MORC3Q14149 939 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 ISM2Q6H9L7 571 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 PDXDC2PQ6P474 469 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 TSHZ1Q6ZSZ6 1077 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 SV2BQ7L1I2 683 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 AOPEPQ8N6M6 819 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 EFHBQ8N7U6 833 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 SEPT1Q8WYJ6 367 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 TRIM5Q9C035 493 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 RC3H2Q9HBD1 1191 aaKnown RBP11.26□□□□□ -0.61
SS18-210ENST00000578700 KCNMB3Q9NPA1 279 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 BMP2KQ9NSY1 1161 aaPredicted RBP11.26□□□□□ -0.61
SS18-210ENST00000578700 TCEAL9Q9UHQ7 104 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 MAN1B1Q9UKM7 699 aa11.26□□□□□ -0.61
SS18-210ENST00000578700 USP15Q9Y4E8 981 aaPredicted RBP11.26□□□□□ -0.61
SS18-210ENST00000578700 LOC730098B7Z3J9 87 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 M0QZ92 97 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 GFRA3O60609 400 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 STAG3L1P0CL83 205 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 SP100P23497 879 aaPredicted RBP11.25□□□□□ -0.61
SS18-210ENST00000578700 CCT6AP40227 531 aaKnown RBP11.25□□□□□ -0.61
SS18-210ENST00000578700 SARSP49591 514 aaKnown RBP11.25□□□□□ -0.61
SS18-210ENST00000578700 MRPS6P82932 125 aaKnown RBP11.25□□□□□ -0.61
SS18-210ENST00000578700 RBM10P98175 930 aaKnown RBP11.25□□□□□ -0.61
SS18-210ENST00000578700 DPYDQ12882 1025 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms