RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TISP43B9A030 160 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 EBAG9O00559 213 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 C21orf2O43822 256 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 P4HBP07237 508 aaKnown RBP24.68■■□□□ 1.54
VPS53-211ENST00000571805 GRIPAP1Q4V328 841 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 MIGA2Q7L4E1 593 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 MAEAQ7L5Y9 396 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 PCIF1Q9H4Z3 704 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 MAPTP10636 758 aaKnown RBP24.68■■□□□ 1.54
VPS53-211ENST00000571805 ITGB3BPQ13352 177 aaPredicted RBP24.68■■□□□ 1.54
VPS53-211ENST00000571805 IL31RAQ8NI17 732 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 CELF4Q9BZC1 486 aaKnown RBP24.68■■□□□ 1.54
VPS53-211ENST00000571805 TMEM39BQ9GZU3 492 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 PKD2L1Q9P0L9 805 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 ZHX2Q9Y6X8 837 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 EMSYQ7Z589 1322 aa24.68■■□□□ 1.54
VPS53-211ENST00000571805 LRRN2O75325 713 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 KRT13P13646 458 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 PPP3CAQ08209 521 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 INTS8Q75QN2 995 aaKnown RBP24.67■■□□□ 1.54
VPS53-211ENST00000571805 CARD9Q9H257 536 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 TMEM206Q9H813 350 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 UBE2TQ9NPD8 197 aaPredicted RBP24.67■■□□□ 1.54
VPS53-211ENST00000571805 LARSQ9P2J5 1176 aaKnown RBP24.67■■□□□ 1.54
VPS53-211ENST00000571805 RAD17O75943 681 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 ICAM1P05362 532 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 INPP5BP32019 993 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 C1orf220Q5T0J3 134 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 ARHGEF19Q8IW93 802 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 C12orf56Q8IXR9 622 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 SLC20A1Q8WUM9 679 aa24.67■■□□□ 1.54
VPS53-211ENST00000571805 DBR1Q9UK59 544 aaKnown RBP24.67■■□□□ 1.54
VPS53-211ENST00000571805 VAMP7P51809 220 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 GUCY1A3Q02108 690 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 OR2W6PQ8NHA6 318 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 CLEC4DQ8WXI8 215 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 SEPT11Q9NVA2 429 aaKnown RBP24.66■■□□□ 1.54
VPS53-211ENST00000571805 CCPG1Q9ULG6 757 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 FAM170AA1A519 330 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 LSP1P33241 339 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 RARRES1P49788 294 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 HADHBP55084 474 aaKnown RBP24.66■■□□□ 1.54
VPS53-211ENST00000571805 ALCAMQ13740 583 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 EPC2Q52LR7 807 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 NIPA1Q7RTP0 329 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 ACCSQ96QU6 501 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 CBWD1Q9BRT8 395 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 VEZTQ9HBM0 779 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 BCS1LQ9Y276 419 aa24.66■■□□□ 1.54
VPS53-211ENST00000571805 NFIBO00712 420 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 P4HA2O15460 535 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 ZEB2O60315 1214 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 PTENP60484 403 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 ZNF844Q08AG5 666 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 PLS3P13797 630 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 CTNNA1P35221 906 aaKnown RBP24.65■■□□□ 1.54
VPS53-211ENST00000571805 FKBP1CQ5VVH2 108 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 ZSWIM2Q8NEG5 633 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 PLEKHO2Q8TD55 490 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 AGO4Q9HCK5 861 aaKnown RBP24.65■■□□□ 1.54
VPS53-211ENST00000571805 FAM114A2Q9NRY5 505 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 ZBTB12Q9Y330 459 aaPredicted RBP24.65■■□□□ 1.54
VPS53-211ENST00000571805 FAM169AQ9Y6X4 670 aa24.65■■□□□ 1.54
VPS53-211ENST00000571805 TCEAL1Q15170 157 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 TKFCQ3LXA3 575 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 NAA35Q5VZE5 725 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 TMC3Q7Z5M5 1100 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 EFCAB13Q8IY85 973 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 OGFOD1Q8N543 542 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 ALG3Q92685 438 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 FAM107BQ9H098 131 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 EPN3Q9H201 632 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 PGAP2Q9UHJ9 254 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 UTP11Q9Y3A2 253 aaKnown RBP24.64■■□□□ 1.54
VPS53-211ENST00000571805 UBIAD1Q9Y5Z9 338 aa24.64■■□□□ 1.54
VPS53-211ENST00000571805 MYZAPP0CAP1 466 aa24.64■■□□□ 1.53
VPS53-211ENST00000571805 MDH1P40925 334 aaKnown RBP24.64■■□□□ 1.53
VPS53-211ENST00000571805 GCLMP48507 274 aa24.64■■□□□ 1.53
VPS53-211ENST00000571805 RHOT2Q8IXI1 618 aa24.64■■□□□ 1.53
VPS53-211ENST00000571805 VTI1AQ96AJ9 217 aa24.64■■□□□ 1.53
VPS53-211ENST00000571805 SAMM50Q9Y512 469 aa24.64■■□□□ 1.53
VPS53-211ENST00000571805 GOLGA6L10A6NI86 522 aa24.63■■□□□ 1.53
VPS53-211ENST00000571805 MYO1FO00160 1098 aa24.63■■□□□ 1.53
VPS53-211ENST00000571805 NDUFAB1O14561 156 aa24.63■■□□□ 1.53
VPS53-211ENST00000571805 MRPS9P82933 396 aaKnown RBP24.63■■□□□ 1.53
VPS53-211ENST00000571805 SPP2Q13103 211 aa24.63■■□□□ 1.53
VPS53-211ENST00000571805 MTMR3Q13615 1198 aa24.63■■□□□ 1.53
VPS53-211ENST00000571805 ATP8B4Q8TF62 1192 aa24.63■■□□□ 1.53
VPS53-211ENST00000571805 TRIM51Q9BSJ1 452 aa24.63■■□□□ 1.53
VPS53-211ENST00000571805 HSPBP1Q9NZL4 362 aa24.63■■□□□ 1.53
VPS53-211ENST00000571805 ALG6Q9Y672 507 aa24.63■■□□□ 1.53
VPS53-211ENST00000571805 LYPLA2O95372 231 aa24.62■■□□□ 1.53
VPS53-211ENST00000571805 FTLP02792 175 aaPredicted RBP24.62■■□□□ 1.53
VPS53-211ENST00000571805 QARSP47897 775 aaKnown RBP24.62■■□□□ 1.53
VPS53-211ENST00000571805 GTF2BQ00403 316 aa24.62■■□□□ 1.53
VPS53-211ENST00000571805 GHRHRQ02643 423 aa24.62■■□□□ 1.53
VPS53-211ENST00000571805 CETN1Q12798 172 aa24.62■■□□□ 1.53
VPS53-211ENST00000571805 PRPF4BQ13523 1007 aaKnown RBP24.62■■□□□ 1.53
VPS53-211ENST00000571805 XXYLT1Q8NBI6 393 aa24.62■■□□□ 1.53
VPS53-211ENST00000571805 DPH5Q9H2P9 285 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms