RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TRIM64CA6NLI5 447 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 PQBP1O60828 265 aaKnown RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 TIPRLO75663 272 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 DHRS4L1P0CG22 281 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 NOS3P29474 1203 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 POLR2BP30876 1174 aaKnown RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 LIFRP42702 1097 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 LSSP48449 732 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 AGFG1P52594 562 aaKnown RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 ZNF143P52747 638 aaPredicted RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 SLC7A5Q01650 507 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 TNFAIP2Q03169 654 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 HSP90AA2PQ14568 343 aaPredicted RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 LRRFIP1Q32MZ4 808 aaKnown RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 RGL3Q3MIN7 710 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 IFIT1BQ5T764 474 aaKnown RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 PIK3R6Q5UE93 754 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 CCDC30Q5VVM6 783 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 NUGGCQ68CJ6 796 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 TTC16Q8NEE8 873 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 CHTF18Q8WVB6 975 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 LMBR1Q8WVP7 490 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 WFDC12Q8WWY7 111 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 CCT6BQ92526 530 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 CCDC47Q96A33 483 aaKnown RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 ACSBG1Q96GR2 724 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 AHCYL2Q96HN2 611 aaKnown RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 ZIC5Q96T25 663 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 OSMRQ99650 979 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 RNF38Q9H0F5 515 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 MS4A5Q9H3V2 200 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 ZDHHC3Q9NYG2 299 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 H2AFY2Q9P0M6 372 aaPredicted RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 NFKBIL1Q9UBC1 381 aaPredicted RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 REV1Q9UBZ9 1251 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 CCDC39Q9UFE4 941 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 PA2G4Q9UQ80 394 aaKnown RBP3.48□□□□□ -1.85
VPS35-209ENST00000568642 AFG3L2Q9Y4W6 797 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 SLC4A7Q9Y6M7 1214 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 LTN1O94822 1766 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 WDR64B1ANS9 1081 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 EIF3FO00303 357 aaPredicted RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 FSCN2O14926 492 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 B3GALT2O43825 422 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 MAFKO60675 156 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 USO1O60763 962 aaKnown RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 CRTAMO95727 393 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 DNTTP04053 509 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 POLBP06746 335 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 EPHX1P07099 455 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 HOXD8P13378 290 aaPredicted RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 EN2P19622 333 aaPredicted RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 SPINK2P20155 84 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 C5AR1P21730 350 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 NME2P22392 152 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 TNFSF4P23510 183 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 SMARCA1P28370 1054 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 SCNN1BP51168 640 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 ZNF157P51786 506 aaPredicted RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 KCNQ4P56696 695 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 MTA1Q13330 715 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 INPP5AQ14642 412 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 KIF22Q14807 665 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 SLC9A5Q14940 896 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 POSTNQ15063 836 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 PDCD1Q15116 288 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 TMEM201Q5SNT2 666 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 SLC35F1Q5T1Q4 408 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 MAP1SQ66K74 1059 aaPredicted RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 IQSEC1Q6DN90 963 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 JMJD6Q6NYC1 403 aaPredicted RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 RPUSD3Q6P087 351 aaKnown RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 TATDN1Q6P1N9 297 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 FBXO46Q6PJ61 603 aaPredicted RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 UNC5DQ6UXZ4 953 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 ENOSF1Q7L5Y1 443 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 NLRC3Q7RTR2 1065 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 SIAH1Q8IUQ4 282 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 HSCBQ8IWL3 235 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 CNTROBQ8N137 903 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 CARNMT1Q8N4J0 409 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 ANKRD52Q8NB46 1076 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 PCYOX1LQ8NBM8 494 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 RHPN1Q8TCX5 695 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 RHBDD1Q8TEB9 315 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 ZFPM2Q8WW38 1151 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 KCTD13Q8WZ19 329 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 HDAC2Q92769 488 aaKnown RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 USP13Q92995 863 aaPredicted RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 TMEM169Q96HH4 297 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 NT5C1BQ96P26 610 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 RMDN3Q96TC7 470 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 DESI2Q9BSY9 194 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 LSM14BQ9BX40 385 aaKnown RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 ABCG4Q9H172 646 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 UNC45AQ9H3U1 944 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 UBN1Q9NPG3 1134 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 C11orf16Q9NQ32 467 aa3.47□□□□□ -1.85
VPS35-209ENST00000568642 ZNF277Q9NRM2 450 aaPredicted RBP3.47□□□□□ -1.85
VPS35-209ENST00000568642 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms