RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 SQSTM1Q13501 440 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 METTL24Q5JXM2 366 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 SLC10A5Q5PT55 438 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 ZMYM1Q5SVZ6 1142 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 GTF2IRD2BQ6EKJ0 949 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 GTF2IRD2Q86UP8 949 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 DTX1Q86Y01 620 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 SCUBE1Q8IWY4 988 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 TTLL11Q8NHH1 800 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 UTP14AQ9BVJ6 771 aaKnown RBP6.88□□□□□ -1.31
VPS39-209ENST00000568029 PUS3Q9BZE2 481 aaKnown RBP6.88□□□□□ -1.31
VPS39-209ENST00000568029 NKX2-4Q9H2Z4 354 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 ZSWIM5Q9P217 1185 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 CTNNA3Q9UI47 895 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 STXBP5LQ9Y2K9 1186 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 ZNF281Q9Y2X9 895 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 RIPOR2Q9Y4F9 1068 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 PCDHAC2Q9Y5I4 1007 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 MED23Q9ULK4 1368 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 DNAJC25-GNG10A0A024R161 153 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 FSD2A1L4K1 749 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 KCNH1O95259 989 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 MBD3O95983 291 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 CPP00450 1065 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 UQCRFS1P1P0C7P4 283 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 VAV1P15498 845 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 RBM10P98175 930 aaKnown RBP6.87□□□□□ -1.31
VPS39-209ENST00000568029 SP3Q02447 781 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 MAP4K2Q12851 820 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 TTF1Q15361 905 aaPredicted RBP6.87□□□□□ -1.31
VPS39-209ENST00000568029 ATP2B3Q16720 1220 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 ADCK5Q3MIX3 580 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 PLEKHG4Q58EX7 1191 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 DDX46Q7L014 1031 aaKnown RBP6.87□□□□□ -1.31
VPS39-209ENST00000568029 APPBP2Q92624 585 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 PPP1R14AQ96A00 147 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 EDC3Q96F86 508 aaKnown RBP6.87□□□□□ -1.31
VPS39-209ENST00000568029 ZDHHC15Q96MV8 337 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 NEK1Q96PY6 1258 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.87□□□□□ -1.316e-6■■■□□ 19.2
VPS39-209ENST00000568029 TMX4Q9H1E5 349 aaPredicted RBP6.87□□□□□ -1.31
VPS39-209ENST00000568029 LMBRD1Q9NUN5 540 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 MTMR10Q9NXD2 777 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 DUSP13Q9UII6 198 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 ZDHHC9Q9Y397 364 aa6.87□□□□□ -1.31
VPS39-209ENST00000568029 MROH5Q6ZUA9 1318 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 MANSC4A6NHS7 340 aaPredicted RBP6.86□□□□□ -1.31
VPS39-209ENST00000568029 WNT10BO00744 389 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 STX6O43752 255 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 ESR1P03372 595 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 ZSCAN22P10073 491 aaPredicted RBP6.86□□□□□ -1.31
VPS39-209ENST00000568029 SPINK2P20155 84 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 GFRA1P56159 465 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 PPP2R5DQ14738 602 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 TESK1Q15569 626 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 CCDC152Q4G0S7 254 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 RCSD1Q6JBY9 416 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 CRTC3Q6UUV7 619 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 ZNF589Q86UQ0 364 aaPredicted RBP6.86□□□□□ -1.31
VPS39-209ENST00000568029 VSIG10LQ86VR7 867 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 BCL7CQ8WUZ0 217 aaPredicted RBP6.86□□□□□ -1.31
VPS39-209ENST00000568029 BTN2A2Q8WVV5 523 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 COPS5Q92905 334 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 KISS1RQ969F8 398 aaPredicted RBP6.86□□□□□ -1.31
VPS39-209ENST00000568029 SYAP1Q96A49 352 aaPredicted RBP6.86□□□□□ -1.31
VPS39-209ENST00000568029 GUCD1Q96NT3 240 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 SLC12A9Q9BXP2 914 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 TMX1Q9H3N1 280 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 GREM2Q9H772 168 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 ATP13A1Q9HD20 1204 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 TCFL5Q9UL49 500 aa6.86□□□□□ -1.31
VPS39-209ENST00000568029 RPAP1Q9BWH6 1393 aaPredicted RBP6.85□□□□□ -1.31
VPS39-209ENST00000568029 RBAK-RBAKDNI3L0D1 243 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 AURKAO14965 403 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 TBX1O43435 398 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 UFL1O94874 794 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 PDE8BO95263 885 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 PABPC1P11940 636 aaKnown RBP6.85□□□□□ -1.31
VPS39-209ENST00000568029 SLC5A1P13866 664 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 CPA1P15085 419 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 GJB2P29033 226 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 ADORA1P30542 326 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 SUMO1P63165 101 aaKnown RBP6.85□□□□□ -1.31
VPS39-209ENST00000568029 PKP1Q13835 747 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 EGFLAMQ63HQ2 1017 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 C16orf86Q6ZW13 317 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 CCDC83Q8IWF9 413 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 FAM43AQ8N2R8 423 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 LPIN2Q92539 896 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 ANP32BQ92688 251 aaKnown RBP6.85□□□□□ -1.31
VPS39-209ENST00000568029 OSBP2Q969R2 916 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 MPHOSPH8Q99549 860 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 DHRS4Q9BTZ2 278 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 KANSL2Q9H9L4 492 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 MINPP1Q9UNW1 487 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 KIF3AQ9Y496 699 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 BACE2Q9Y5Z0 518 aa6.85□□□□□ -1.31
VPS39-209ENST00000568029 TRBV23-1A0A0A0MS06 115 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 ESYT3A0FGR9 886 aa6.84□□□□□ -1.31
VPS39-209ENST00000568029 CLSTN1O94985 981 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms