RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 TRAIPQ9BWF2 469 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 MFRPQ9BY79 579 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 TMEM117Q9H0C3 514 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 FOXP1Q9H334 677 aaPredicted RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 DHX33Q9H6R0 707 aaKnown RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 TTC12Q9H892 705 aaPredicted RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 ALG13Q9NP73 1137 aaKnown RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 CHST12Q9NRB3 414 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 RGL1Q9NZL6 768 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 SUCLA2Q9P2R7 463 aaPredicted RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 WRAP73Q9P2S5 460 aaPredicted RBP5.35□□□□□ -1.55
CLK3-219ENST00000567805 PCDHB12Q9Y5F1 795 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 COL4A3BPQ9Y5P4 624 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 BDP1A6H8Y1 2624 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 BRWD1Q9NSI6 2320 aa5.35□□□□□ -1.55
CLK3-219ENST00000567805 FSD2A1L4K1 749 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 GRXCR2A6NFK2 248 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 WNT7AO00755 349 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 ASAP2O43150 1006 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 CSDE1O75534 798 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 PPP1R37O75864 691 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 SLITRK3O94933 977 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 LYPLA2O95372 231 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 SKIP12755 728 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 LAG3P18627 525 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 FGFR4P22455 802 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 DNAJB1P25685 340 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 PPM1AP35813 382 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 TXKP42681 527 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 PHKA2P46019 1235 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 GUCY1B3Q02153 619 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 HYAL1Q12794 435 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 GNL2Q13823 731 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 CAMK1Q14012 370 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 CTTNQ14247 550 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 MXD4Q14582 209 aaPredicted RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 EMC2Q15006 297 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 RABEP1Q15276 862 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 PCBP1Q15365 356 aaKnown RBP eCLIP5.34□□□□□ -1.55
CLK3-219ENST00000567805 TMEM132AQ24JP5 1023 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 CTC1Q2NKJ3 1217 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 XKR9Q5GH70 373 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 TWF2Q6IBS0 349 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 PTCRAQ6ISU1 281 aaPredicted RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 PDE12Q6L8Q7 609 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 CATSPER4Q7RTX7 472 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 SRGAP1Q7Z6B7 1085 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 ZNF598Q86UK7 904 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 NOSTRINQ8IVI9 506 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 KSR1Q8IVT5 923 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 TPH2Q8IWU9 490 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 LRRC43Q8N309 656 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 FAM184AQ8NB25 1140 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 COLGALT1Q8NBJ5 622 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 POF1BQ8WVV4 589 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 PRPF31Q8WWY3 499 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 CCDC43Q96MW1 224 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 NECAB3Q96P71 396 aaPredicted RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 MTRQ99707 1265 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 HSD17B14Q9BPX1 270 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 MRPL9Q9BYD2 267 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 CWH43Q9H720 699 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 UPF2Q9HAU5 1272 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 IFT122Q9HBG6 1241 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 TLR9Q9NR96 1032 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 ANKEF1Q9NU02 776 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 AGPAT5Q9NUQ2 364 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 RNF19AQ9NV58 838 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 TYW1Q9NV66 732 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 CLDND1Q9NY35 253 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 PIN4Q9Y237 131 aaKnown RBP5.34□□□□□ -1.55
CLK3-219ENST00000567805 FAM50BQ9Y247 325 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 LZTS1Q9Y250 596 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 MYH11P35749 1972 aa5.34□□□□□ -1.55
CLK3-219ENST00000567805 MYO7AQ13402 2215 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 CARNS1A5YM72 827 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 H3BQ06 376 aaPredicted RBP5.33□□□□□ -1.56
CLK3-219ENST00000567805 ZBTB39O15060 712 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 ZNF623O75123 536 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 DGAT1O75907 488 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 FGF18O76093 207 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 CSPG5O95196 566 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 SRGAP2CP0DJJ0 459 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 XRCC6P12956 609 aaKnown RBP eCLIP5.33□□□□□ -1.56
CLK3-219ENST00000567805 ATF7P17544 494 aaPredicted RBP5.33□□□□□ -1.56
CLK3-219ENST00000567805 ATP2B1P20020 1258 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 AXLP30530 894 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 MCM7P33993 719 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 LTBRP36941 435 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 TRAPPC10P48553 1259 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 RARRES1P49788 294 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 RAB27AP51159 221 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 PLCB3Q01970 1234 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 KRT17Q04695 432 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 POU5F1BQ06416 359 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 LAMTOR4Q0VGL1 99 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 ADAM15Q13444 863 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 TFDP1Q14186 410 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 CLLU1OSQ5K130 101 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms