RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 LRRC55Q6ZSA7 311 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 GIMAP7Q8NHV1 300 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 NSUN6Q8TEA1 469 aaKnown RBP12.47□□□□□ -0.41
CDH1-210ENST00000566612 NUP85Q9BW27 656 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 RAB20Q9NX57 234 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 DISP2A7MBM2 1401 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 SPDYE2BA6NHP3 402 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 FOXN3O00409 490 aaPredicted RBP12.47□□□□□ -0.41
CDH1-210ENST00000566612 SPDYE6P0CI01 402 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 DPEP1P16444 411 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 RWDD2BP57060 319 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 CDK17Q00537 523 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 KRT39Q6A163 491 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 THNSL1Q8IYQ7 743 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 MMGT1Q8N4V1 131 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 NEK9Q8TD19 979 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 CDHR1Q96JP9 859 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 MSTO1Q9BUK6 570 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 ODF2LQ9ULJ1 636 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 PCDHA10Q9Y5I2 948 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 GRID2IPA4D2P6 1211 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 TMEM150BA6NC51 233 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 DYNLT1P63172 113 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 GKAP1Q5VSY0 366 aaPredicted RBP12.47□□□□□ -0.41
CDH1-210ENST00000566612 SULF1Q8IWU6 871 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 C11orf70Q9BRQ4 267 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 IKZF4Q9H2S9 585 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 INTS9Q9NV88 658 aaKnown RBP12.47□□□□□ -0.41
CDH1-210ENST00000566612 ZBTB16Q05516 673 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 TMEM270Q6UE05 265 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 SLC17A8Q8NDX2 589 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 ZNF564Q8TBZ8 553 aaPredicted RBP12.47□□□□□ -0.41
CDH1-210ENST00000566612 MAIP1Q8WWC4 291 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 ELMO3Q96BJ8 720 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 CBWD1Q9BRT8 395 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 TLR10Q9BXR5 811 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 PNMA2Q9UL42 364 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 TMX2Q9Y320 296 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 MYH2Q9UKX2 1941 aa12.47□□□□□ -0.41
CDH1-210ENST00000566612 ATP5DP30049 168 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 ACOT2P49753 483 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 SCYL2Q6P3W7 929 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 USP38Q8NB14 1042 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 PPP1R14CQ8TAE6 165 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 SYN2Q92777 582 aaPredicted RBP12.46□□□□□ -0.41
CDH1-210ENST00000566612 VTI1AQ96AJ9 217 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 HAUS1Q96CS2 278 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 NLRP4Q96MN2 994 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 ZIM3Q96PE6 472 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 OSGEPQ9NPF4 335 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 SLITRK3O94933 977 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 STX2P32856 288 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 CAP2P40123 477 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 MAGOHP61326 146 aaKnown RBP12.46□□□□□ -0.41
CDH1-210ENST00000566612 GABPAQ06546 454 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 KCNMA1Q12791 1236 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 PPP2R5AQ15172 486 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 PAF1Q8N7H5 531 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 CCDC89Q8N998 374 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 ATG4CQ96DT6 458 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 PI4K2AQ9BTU6 479 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 VIPAS39Q9H9C1 493 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 RAB21Q9UL25 225 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 IVNS1ABPQ9Y6Y0 642 aa12.46□□□□□ -0.41
CDH1-210ENST00000566612 ADAMTSL3P82987 1691 aa12.46□□□□□ -0.42
CDH1-210ENST00000566612 POC1B-GALNT4F8VUJ3 575 aa12.46□□□□□ -0.42
CDH1-210ENST00000566612 NR3C2P08235 984 aa12.46□□□□□ -0.42
CDH1-210ENST00000566612 EAPPQ56P03 285 aaPredicted RBP12.46□□□□□ -0.42
CDH1-210ENST00000566612 MOXD1Q6UVY6 613 aa12.46□□□□□ -0.42
CDH1-210ENST00000566612 FBXL13Q8NEE6 735 aa12.46□□□□□ -0.42
CDH1-210ENST00000566612 MCPH1Q8NEM0 835 aa12.46□□□□□ -0.42
CDH1-210ENST00000566612 TMEM143Q96AN5 459 aa12.46□□□□□ -0.42
CDH1-210ENST00000566612 ADAM22Q9P0K1 906 aa12.46□□□□□ -0.42
CDH1-210ENST00000566612 GLI1P08151 1106 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 GRM1Q13255 1194 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 ZKSCAN8Q15776 578 aaPredicted RBP12.45□□□□□ -0.42
CDH1-210ENST00000566612 SNRNP35Q16560 246 aaKnown RBP12.45□□□□□ -0.42
CDH1-210ENST00000566612 MICALL2Q8IY33 904 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 C1orf54Q8WWF1 131 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 THAP2Q9H0W7 228 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 HOMER3Q9NSC5 361 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 CD2APQ9Y5K6 639 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 HMGB1P1B2RPK0 211 aaPredicted RBP12.45□□□□□ -0.42
CDH1-210ENST00000566612 TRIM66O15016 1216 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 TNNC2P02585 160 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 SLC12A3P55017 1021 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 Q4G0T1 1027 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 ZNF720Q7Z2F6 126 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 CREG2Q8IUH2 290 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 GMCL1P1Q8NEA9 526 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 IDI2Q9BXS1 227 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 POLR3FQ9H1D9 316 aaPredicted RBP12.45□□□□□ -0.42
CDH1-210ENST00000566612 ATP6V0A4Q9HBG4 840 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 BCL9LQ86UU0 1499 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 MIF4GDA9UHW6 222 aaKnown RBP12.45□□□□□ -0.42
CDH1-210ENST00000566612 PLS3P13797 630 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 SLC15A2Q16348 729 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 CCDC63Q8NA47 563 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 TPCN2Q8NHX9 752 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 RIT2Q99578 217 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms