RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 KIAA0391O15091 583 aaKnown RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 MTA2O94776 668 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 TRIM49P0CI25 452 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 TRIM49CP0CI26 452 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 CXCR5P32302 372 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 MATR3P43243 847 aaKnown RBP eCLIP6.78□□□□□ -1.32
CLN3-223ENST00000566472 MXI1P50539 228 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 SMTNP53814 917 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 GALCP54803 685 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 RPS6P62753 249 aaKnown RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 COG2Q14746 738 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 ENOX2Q16206 610 aaKnown RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 ARHGEF16Q5VV41 709 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 GJB7Q6PEY0 223 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 OTUD6AQ7L8S5 288 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 HAUS6Q7Z4H7 955 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 NT5DC3Q86UY8 548 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 APOBEC3FQ8IUX4 373 aaKnown RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 GPIHBP1Q8IV16 184 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 MAP4K3Q8IVH8 894 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 GSPT2Q8IYD1 628 aaKnown RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 METTL13Q8N6R0 699 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 REPS2Q8NFH8 660 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 FAM76AQ8TAV0 307 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 TMC2Q8TDI7 906 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 HDAC7Q8WUI4 952 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 KIFAP3Q92845 792 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 ATP6V0A1Q93050 837 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 HES6Q96HZ4 224 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 TRERF1Q96PN7 1200 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 TAAR1Q96RJ0 339 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 PSMB7Q99436 277 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 AGPAT1Q99943 283 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 MOV10L1Q9BXT6 1211 aaKnown RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 ISCUQ9H1K1 167 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 CARD9Q9H257 536 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 RPAP3Q9H6T3 665 aaPredicted RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 BCAS3Q9H6U6 928 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 FAM204AQ9H8W3 233 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 RAVER2Q9HCJ3 691 aaKnown RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 RNF146Q9NTX7 359 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.78□□□□□ -1.32
CLN3-223ENST00000566472 SMARCAL1Q9NZC9 954 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 HSPBP1Q9NZL4 362 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 NOC2LQ9Y3T9 749 aaKnown RBP6.78□□□□□ -1.32
CLN3-223ENST00000566472 SAMM50Q9Y512 469 aa6.78□□□□□ -1.32
CLN3-223ENST00000566472 EMSYQ7Z589 1322 aa6.77□□□□□ -1.32
CLN3-223ENST00000566472 ERICH4A6NGS2 130 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 VWA5AO00534 786 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 BACH1O14867 736 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 RAD51CO43502 376 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 CEP104O60308 925 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 SHOX2O60902 331 aaPredicted RBP6.77□□□□□ -1.33
CLN3-223ENST00000566472 ZC3H11AO75152 810 aaKnown RBP eCLIP6.77□□□□□ -1.33
CLN3-223ENST00000566472 ZMYND10O75800 440 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 GGPS1O95749 300 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 PSAPP07602 524 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 GZMAP12544 262 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 CAPN2P17655 700 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 EIF2AK2P19525 551 aaKnown RBP6.77□□□□□ -1.33
CLN3-223ENST00000566472 GARTP22102 1010 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 GBP1P32455 592 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 DSG3P32926 999 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 GGCXP38435 758 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 HSPA9P38646 679 aaKnown RBP6.77□□□□□ -1.33
CLN3-223ENST00000566472 MFAP3P55082 362 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 BACE1P56817 501 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 GUCY2DQ02846 1103 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 DMP1Q13316 513 aaPredicted RBP6.77□□□□□ -1.33
CLN3-223ENST00000566472 MTMR2Q13614 643 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 XKR9Q5GH70 373 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 SPDYCQ5MJ68 293 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 NOL9Q5SY16 702 aaKnown RBP6.77□□□□□ -1.33
CLN3-223ENST00000566472 LRIG3Q6UXM1 1119 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 SLC30A10Q6XR72 485 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 ENOSF1Q7L5Y1 443 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 MAATS1Q7Z4T9 603 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 DAAM2Q86T65 1068 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 VSIG10LQ86VR7 867 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 GLYCTKQ8IVS8 523 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 EFCAB13Q8IY85 973 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 CPXCR1Q8N123 301 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 ZNF280CQ8ND82 737 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 MCPH1Q8NEM0 835 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 CCDC26Q8TAB7 109 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 CASKIN2Q8WXE0 1202 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 DHX38Q92620 1227 aaKnown RBP6.77□□□□□ -1.33
CLN3-223ENST00000566472 LRRC45Q96CN5 670 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 MS4A14Q96JA4 679 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 FBXL18Q96ME1 805 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 RMDN3Q96TC7 470 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 KRT12Q99456 494 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 NTPCRQ9BSD7 190 aaKnown RBP6.77□□□□□ -1.33
CLN3-223ENST00000566472 TAF1DQ9H5J8 278 aaPredicted RBP6.77□□□□□ -1.33
CLN3-223ENST00000566472 KIAA1586Q9HCI6 787 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 TMEM8AQ9HCN3 771 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 FAM114A2Q9NRY5 505 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 EHD2Q9NZN4 543 aa6.77□□□□□ -1.33
CLN3-223ENST00000566472 TBX20Q9UMR3 447 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms