RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 INTUQ9ULD6 942 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 RLFQ13129 1914 aa14.37□□□□□ -0.11
VPS4A-204ENST00000566354 H0YGN5 161 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 OPLAHO14841 1288 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 FSBPO95073 299 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 FAM107AO95990 144 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 CASP5P51878 434 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 GSCP56915 257 aaPredicted RBP14.36□□□□□ -0.11
VPS4A-204ENST00000566354 BIRC3Q13489 604 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 MOXD1Q6UVY6 613 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 EPM2AIP1Q7L775 607 aaPredicted RBP14.36□□□□□ -0.11
VPS4A-204ENST00000566354 SLFN11Q7Z7L1 901 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 SYCE1Q8N0S2 351 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 METTL13Q8N6R0 699 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 ERMNQ8TAM6 284 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 MYCBPAPQ8TBZ2 947 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 RNF217Q8TC41 542 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 CEP89Q96ST8 783 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 DNM3Q9UQ16 869 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 NFS1Q9Y697 457 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 SPDYE5A6NIY4 337 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 ZBTB48P10074 688 aaPredicted RBP14.36□□□□□ -0.11
VPS4A-204ENST00000566354 RPL13P26373 211 aaKnown RBP14.36□□□□□ -0.11
VPS4A-204ENST00000566354 HNRNPH1P31943 449 aaKnown RBP14.36□□□□□ -0.11
VPS4A-204ENST00000566354 NPEPPSP55786 919 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 MTMR3Q13615 1198 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 PEX26Q7Z412 305 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 ERO1BQ86YB8 467 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 SYT2Q8N9I0 419 aaPredicted RBP14.36□□□□□ -0.11
VPS4A-204ENST00000566354 TMOD4Q9NZQ9 345 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 SUCLA2Q9P2R7 463 aaPredicted RBP14.36□□□□□ -0.11
VPS4A-204ENST00000566354 PPP1R9AQ9ULJ8 1098 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 NENFQ9UMX5 172 aa14.36□□□□□ -0.11
VPS4A-204ENST00000566354 ZNF536O15090 1300 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 POTEFA5A3E0 1075 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 KRIT1O00522 736 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 H2AFZP0C0S5 128 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 CTNNA1P35221 906 aaKnown RBP14.35□□□□□ -0.11
VPS4A-204ENST00000566354 PPATQ06203 517 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 EPHA7Q15375 998 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 LDLRAD1Q5T700 205 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 MCTP2Q6DN12 878 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 POTEGQ6S5H5 508 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 POTEEQ6S8J3 1075 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 H2AFVQ71UI9 128 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 CATSPER3Q86XQ3 398 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 RASGEF1CQ8N431 466 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 C3orf20Q8ND61 904 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 CCDC26Q8TAB7 109 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 RBM46Q8TBY0 533 aaKnown RBP14.35□□□□□ -0.11
VPS4A-204ENST00000566354 ITFG2Q969R8 447 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 ATG4CQ96DT6 458 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 AGBL1Q96MI9 1066 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 AP1M1Q9BXS5 423 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 ANO3Q9BYT9 981 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 SLITRK6Q9H5Y7 841 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 NOC2LQ9Y3T9 749 aaKnown RBP14.35□□□□□ -0.11
VPS4A-204ENST00000566354 STK24Q9Y6E0 443 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 CAPN7Q9Y6W3 813 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 TMCO5BA8MYB1 307 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 MEIS2O14770 477 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 TBX3O15119 743 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 SLC16A3O15427 465 aaKnown RBP14.35□□□□□ -0.11
VPS4A-204ENST00000566354 RPA1P27694 616 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 HOXD13P35453 343 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 STAT3P40763 770 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 FNTAP49354 379 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 SEC24CP53992 1094 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 JAM2P57087 298 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 UAP1Q16222 522 aaPredicted RBP14.35□□□□□ -0.11
VPS4A-204ENST00000566354 SH3D19Q5HYK7 790 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 TREML2Q5T2D2 321 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 FBXW10Q5XX13 1052 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 CPXCR1Q8N123 301 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 OPTNQ96CV9 577 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 UIMC1Q96RL1 719 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 P2RX7Q99572 595 aaKnown RBP14.35□□□□□ -0.11
VPS4A-204ENST00000566354 GOLPH3Q9H4A6 298 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 POLD4Q9HCU8 107 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 STXBP5LQ9Y2K9 1186 aa14.35□□□□□ -0.11
VPS4A-204ENST00000566354 E7EVH7 732 aa14.34□□□□□ -0.11
VPS4A-204ENST00000566354 AKAP3O75969 853 aa14.34□□□□□ -0.11
VPS4A-204ENST00000566354 HPDP32754 393 aaPredicted RBP14.34□□□□□ -0.11
VPS4A-204ENST00000566354 SPIRE1Q08AE8 756 aa14.34□□□□□ -0.11
VPS4A-204ENST00000566354 ZNF844Q08AG5 666 aa14.34□□□□□ -0.11
VPS4A-204ENST00000566354 AP3B2Q13367 1082 aa14.34□□□□□ -0.11
VPS4A-204ENST00000566354 BMT2Q1RMZ1 405 aa14.34□□□□□ -0.11
VPS4A-204ENST00000566354 SFR1Q86XK3 245 aa14.34□□□□□ -0.11
VPS4A-204ENST00000566354 REEP2Q9BRK0 252 aa14.34□□□□□ -0.11
VPS4A-204ENST00000566354 DDX47Q9H0S4 455 aaKnown RBP14.34□□□□□ -0.11
VPS4A-204ENST00000566354 CENPHQ9H3R5 247 aa14.34□□□□□ -0.11
VPS4A-204ENST00000566354 SLC38A10Q9HBR0 1119 aa14.34□□□□□ -0.11
VPS4A-204ENST00000566354 TYW1Q9NV66 732 aaKnown RBP14.34□□□□□ -0.11
VPS4A-204ENST00000566354 COL11A1P12107 1806 aaPredicted RBP14.34□□□□□ -0.11
VPS4A-204ENST00000566354 GTPBP10A4D1E9 387 aaKnown RBP14.33□□□□□ -0.11
VPS4A-204ENST00000566354 H0YHG0 523 aa14.33□□□□□ -0.11
VPS4A-204ENST00000566354 GFPT2O94808 682 aa14.33□□□□□ -0.11
VPS4A-204ENST00000566354 CELF2O95319 508 aaKnown RBP14.33□□□□□ -0.11
VPS4A-204ENST00000566354 DCAF17Q5H9S7 520 aaPredicted RBP14.33□□□□□ -0.11
VPS4A-204ENST00000566354 AGBL2Q5U5Z8 902 aa14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms