RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 DCLRE1AQ6PJP8 1040 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 TMTC3Q6ZXV5 915 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 NIPA1Q7RTP0 329 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 FANCBQ8NB91 859 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 SUMF1Q8NBK3 374 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 RSPH1Q8WYR4 309 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 SMG7Q92540 1137 aaKnown RBP8.28□□□□□ -1.08
VPS4A-203ENST00000564399 NXPE3Q969Y0 559 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 FAM193BQ96PV7 902 aaPredicted RBP8.28□□□□□ -1.08
VPS4A-203ENST00000564399 MYADMQ96S97 322 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 ZNF577Q9BSK1 485 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 VN1R3Q9BXE9 311 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 GCOM2Q9BZD3 368 aaPredicted RBP8.28□□□□□ -1.08
VPS4A-203ENST00000564399 FOXQ1Q9C009 403 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 PIDD1Q9HB75 910 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 WDR6Q9NNW5 1121 aaKnown RBP8.28□□□□□ -1.08
VPS4A-203ENST00000564399 MAN1C1Q9NR34 630 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 CHST12Q9NRB3 414 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 NRBP2Q9NSY0 501 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 TBC1D22BQ9NU19 505 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 EPS15L1Q9UBC2 864 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 DNAJB4Q9UDY4 337 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 DPP7Q9UHL4 492 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 PCDHA10Q9Y5I2 948 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 SLC12A7Q9Y666 1083 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 ATRXP46100 2492 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 CHD6Q8TD26 2715 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 CLUHO75153 1309 aa8.28□□□□□ -1.08
VPS4A-203ENST00000564399 FRYLO94915 3013 aa8.27□□□□□ -1.08
VPS4A-203ENST00000564399 MYH15Q9Y2K3 1946 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 FAM208BQ5VWN6 2430 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 SMCO2A6NFE2 343 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 POTEMA6NI47 508 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 FAM86B1E9PN63 330 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 SH2B2O14492 632 aaPredicted RBP8.27□□□□□ -1.09
VPS4A-203ENST00000564399 LAMTOR5O43504 91 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 URODP06132 367 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 ADH1AP07327 375 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 FAM86B2P0C5J1 330 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 MCM5P33992 734 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 SREBF1P36956 1147 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 ATXN1P54253 815 aaKnown RBP8.27□□□□□ -1.09
VPS4A-203ENST00000564399 AP3B2Q13367 1082 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 ST3GAL2Q16842 350 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 JAKMIP3Q5VZ66 844 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 POTEGQ6S5H5 508 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 MICU3Q86XE3 530 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 ZNF280BQ86YH2 543 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 SMAP1Q8IYB5 467 aaPredicted RBP8.27□□□□□ -1.09
VPS4A-203ENST00000564399 GPR161Q8N6U8 529 aaKnown RBP8.27□□□□□ -1.09
VPS4A-203ENST00000564399 LINC01465Q8N7H1 131 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 ST13P5Q8NFI4 369 aaPredicted RBP8.27□□□□□ -1.09
VPS4A-203ENST00000564399 CMASQ8NFW8 434 aaPredicted RBP8.27□□□□□ -1.09
VPS4A-203ENST00000564399 URGCPQ8TCY9 931 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 ATRIPQ8WXE1 791 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 SECISBP2LQ93073 1101 aaKnown RBP8.27□□□□□ -1.09
VPS4A-203ENST00000564399 SHDQ96IW2 340 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 TMEM87BQ96K49 555 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 MTA3Q9BTC8 594 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 SPATA6Q9NWH7 488 aaPredicted RBP8.27□□□□□ -1.09
VPS4A-203ENST00000564399 DLGAP2Q9P1A6 1054 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 STK39Q9UEW8 545 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 CDV3Q9UKY7 258 aaKnown RBP8.27□□□□□ -1.09
VPS4A-203ENST00000564399 PIN4Q9Y237 131 aaKnown RBP8.27□□□□□ -1.09
VPS4A-203ENST00000564399 FAN1Q9Y2M0 1017 aa8.27□□□□□ -1.09
VPS4A-203ENST00000564399 A0A087WZ62 844 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 DCDC2BA2VCK2 349 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 MEIS3P2A8K0S8 358 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 PRR5-ARHGAP8B1AHC4 643 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 SPTLC1O15269 473 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 LRRN2O75325 713 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 OFD1O75665 1012 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 RFPL2O75678 378 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 GLUD1P00367 558 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 OATP04181 439 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 ALDH2P05091 517 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 SPATA31D3P0C874 917 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 LAMP2P13473 410 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 GLULP15104 373 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 SFPQP23246 707 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS4A-203ENST00000564399 LIFRP42702 1097 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 RAB27AP51159 221 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 ARHGAP8P85298 464 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 LMNB2Q03252 620 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 CSTF1Q05048 431 aaKnown RBP8.26□□□□□ -1.09
VPS4A-203ENST00000564399 TYW1BQ6NUM6 668 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 PPP1R18Q6NYC8 613 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 CYP26C1Q6V0L0 522 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 SYNE3Q6ZMZ3 975 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 SPATA31D4Q6ZUB0 917 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 GET4Q7L5D6 327 aaPredicted RBP8.26□□□□□ -1.09
VPS4A-203ENST00000564399 CATSPER4Q7RTX7 472 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 TEX2Q8IWB9 1127 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 PJA1Q8NG27 643 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 PHKBQ93100 1093 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 PGBD4Q96DM1 585 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 CHAMP1Q96JM3 812 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 FDXACB1Q9BRP7 624 aaPredicted RBP8.26□□□□□ -1.09
VPS4A-203ENST00000564399 LRRC2Q9BYS8 371 aa8.26□□□□□ -1.09
VPS4A-203ENST00000564399 BCO2Q9BYV7 579 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms