RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 LY6KQ17RY6 165 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 CCDC40Q4G0X9 1142 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 VWA3BQ502W6 1294 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 XKR3Q5GH77 459 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 FAM160B1Q5W0V3 765 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 FAM109BQ6ICB4 259 aaPredicted RBP9.81□□□□□ -0.84
VPS39-207ENST00000563692 ARMCX5Q6P1M9 558 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 NFRKBQ6P4R8 1299 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 Q7L0L9 218 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 CYFIP1Q7L576 1253 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 EPM2AIP1Q7L775 607 aaPredicted RBP9.81□□□□□ -0.84
VPS39-207ENST00000563692 ZNF720Q7Z2F6 126 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 CNGA4Q8IV77 575 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 RETREG2Q8NC44 543 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 AFG1LQ8WV93 481 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 COPS5Q92905 334 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 CEP170P1Q96L14 293 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 PCMTD1Q96MG8 357 aaPredicted RBP9.81□□□□□ -0.84
VPS39-207ENST00000563692 NAA15Q9BXJ9 866 aaKnown RBP9.81□□□□□ -0.84
VPS39-207ENST00000563692 TRPV6Q9H1D0 765 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 KCTD10Q9H3F6 313 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 TMEM206Q9H813 350 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 C17orf75Q9HAS0 396 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 ZNF302Q9NR11 478 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 TYW1Q9NV66 732 aaKnown RBP9.81□□□□□ -0.84
VPS39-207ENST00000563692 INTS13Q9NVM9 706 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 RSPH10B2B2RC85 870 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 STX10O60499 249 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 DGAT1O75907 488 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 PRPF6O94906 941 aaKnown RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 ARIH2O95376 493 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 MMP3P08254 477 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 RSPH10BP0C881 870 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 MYBP10242 640 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 PLS3P13797 630 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 CSF2RAP15509 400 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 CYP2C18P33260 490 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 KCNJ6P48051 423 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 SNRPFP62306 86 aaKnown RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 SP2Q02086 613 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 PTPN11Q06124 597 aaPredicted RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 NBPF20Q3BBV1 942 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 ZCWPW2Q504Y3 356 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 DNTTIP2Q5QJE6 756 aaKnown RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 CCDC62Q6P9F0 684 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 HS2ST1Q7LGA3 356 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 FRMD5Q7Z6J6 570 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 DHX37Q8IY37 1157 aaKnown RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 EXOC8Q8IYI6 725 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 RPUSD2Q8IZ73 545 aaKnown RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 SYCP3Q8IZU3 236 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 MCPH1Q8NEM0 835 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 ZNF397Q8NF99 534 aaPredicted RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 SEPT1Q8WYJ6 367 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 KIFAP3Q92845 792 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 PANX2Q96RD6 677 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 BAG1Q99933 345 aaPredicted RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 KATNAL1Q9BW62 490 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 NDST4Q9H3R1 872 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 AZI2Q9H6S1 392 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 METTL14Q9HCE5 456 aaKnown RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 CGNQ9P2M7 1197 aaKnown RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 DDX41Q9UJV9 622 aaKnown RBP9.8□□□□□ -0.84
VPS39-207ENST00000563692 PYCARDQ9ULZ3 195 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 PPME1Q9Y570 386 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 DNAH12Q6ZR08 3092 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 GRIN2DO15399 1336 aa9.8□□□□□ -0.84
VPS39-207ENST00000563692 LRRC37A2A6NM11 1700 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 H0YCG3 227 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 USO1O60763 962 aaKnown RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 SCP2P22307 547 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 UBA1P22314 1058 aaKnown RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 NR2F2P24468 414 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 NMT1P30419 496 aaKnown RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 EPHB4P54760 987 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 MARSP56192 900 aaKnown RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 CCZ1BP86790 482 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 CCZ1P86791 482 aaPredicted RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 SP4Q02446 784 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 ARHGAP1Q07960 439 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 RBL2Q08999 1139 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 BFSP2Q13515 415 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 MYBPC2Q14324 1141 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 ARID5BQ14865 1188 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 NFIL3Q16649 462 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 UGCGQ16739 394 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 FAM102BQ5T8I3 360 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 UTP14CQ5TAP6 766 aaKnown RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 METTL7BQ6UX53 244 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 LRRC55Q6ZSA7 311 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 ANO5Q75V66 913 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 MAEAQ7L5Y9 396 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 ZC3H3Q8IXZ2 948 aaKnown RBP9.79□□□□□ -0.84
VPS39-207ENST00000563692 CCDC155Q8N6L0 562 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 GLIS3Q8NEA6 775 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 PPTC7Q8NI37 304 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 CPLX3Q8WVH0 158 aa9.79□□□□□ -0.84
VPS39-207ENST00000563692 EMID1Q96A84 441 aaPredicted RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms