RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 ALG6Q9Y672 507 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 GNAT1P11488 350 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 RARGP13631 454 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 HOXD13P35453 343 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 DRG2P55039 364 aaKnown RBP17.76■□□□□ 0.43
TPM1-228ENST00000560975 MXRA7P84157 204 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 TNFAIP8L3Q5GJ75 292 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 CGB2Q6NT52 195 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 SLC30A9Q6PML9 568 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 CROCCP2Q86T23 111 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 ZC3H3Q8IXZ2 948 aaKnown RBP17.76■□□□□ 0.43
TPM1-228ENST00000560975 ANKLE1Q8NAG6 615 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 SLC30A5Q8TAD4 765 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 FBF1Q8TES7 1133 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 CEP95Q96GE4 821 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 PAIP2Q9BPZ3 127 aaKnown RBP17.76■□□□□ 0.43
TPM1-228ENST00000560975 GPCPD1Q9NPB8 672 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 USP40Q9NVE5 1235 aa17.76■□□□□ 0.43
TPM1-228ENST00000560975 CPSF2Q9P2I0 782 aaKnown RBP17.76■□□□□ 0.43
TPM1-228ENST00000560975 NEFHP12036 1026 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 GBP1P32455 592 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 STX2P32856 288 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 RFC4P35249 363 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 KNOP1Q1ED39 458 aaKnown RBP17.75■□□□□ 0.43
TPM1-228ENST00000560975 PPP4R3CPQ6ZMV5 832 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 ECHDC2Q86YB7 292 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 SLC35C1Q96A29 364 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 CDC42EP4Q9H3Q1 356 aaKnown RBP17.75■□□□□ 0.43
TPM1-228ENST00000560975 DIS3Q9Y2L1 958 aaKnown RBP17.75■□□□□ 0.43
TPM1-228ENST00000560975 NCANO14594 1321 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 BRAFP15056 766 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 PECAM1P16284 738 aaPredicted RBP17.75■□□□□ 0.43
TPM1-228ENST00000560975 HOXA7P31268 230 aaPredicted RBP17.75■□□□□ 0.43
TPM1-228ENST00000560975 CHRNA3P32297 505 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 EIF6P56537 245 aaKnown RBP17.75■□□□□ 0.43
TPM1-228ENST00000560975 RWDD2BP57060 319 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 KCNA1Q09470 495 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 DRAP1Q14919 205 aaPredicted RBP17.75■□□□□ 0.43
TPM1-228ENST00000560975 ARHGAP44Q17R89 818 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 INTS5Q6P9B9 1019 aaKnown RBP17.75■□□□□ 0.43
TPM1-228ENST00000560975 BICDL1Q6ZP65 573 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 OLIG1Q8TAK6 271 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 CKAP2Q8WWK9 683 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 TMEM109Q9BVC6 243 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 NT5C3AQ9H0P0 336 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 PIDD1Q9HB75 910 aa17.75■□□□□ 0.43
TPM1-228ENST00000560975 NR3C1P04150 777 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 LMNB1P20700 586 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 SOX5P35711 763 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 PABPC4Q13310 644 aaKnown RBP eCLIP17.74■□□□□ 0.437e-11■□□□□ 8
TPM1-228ENST00000560975 CTTNQ14247 550 aaKnown RBP17.74■□□□□ 0.43
TPM1-228ENST00000560975 VSIG1Q86XK7 387 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 CTTNBP2NLQ9P2B4 639 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 PRKAG3Q9UGI9 489 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 O00370 1275 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 MED24O75448 989 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 UNC5CO95185 931 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 TNFAIP3P21580 790 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 TARSP26639 723 aaKnown RBP17.74■□□□□ 0.43
TPM1-228ENST00000560975 PSMC6P62333 389 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 PARP2Q9UGN5 583 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 DNAJC12Q9UKB3 198 aa17.74■□□□□ 0.43
TPM1-228ENST00000560975 ESYT2A0FGR8 921 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 PODXLO00592 558 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 CRKLP46109 303 aaKnown RBP17.73■□□□□ 0.43
TPM1-228ENST00000560975 CDK8P49336 464 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 GRIK5Q16478 980 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 MFSD5Q6N075 450 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 INTS8Q75QN2 995 aaKnown RBP17.73■□□□□ 0.43
TPM1-228ENST00000560975 RAB3IPQ96QF0 476 aaPredicted RBP17.73■□□□□ 0.43
TPM1-228ENST00000560975 MYLK2Q9H1R3 596 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 PAPOLBQ9NRJ5 636 aaKnown RBP17.73■□□□□ 0.43
TPM1-228ENST00000560975 CCDC87Q9NVE4 849 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 HAO1Q9UJM8 370 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 BCS1LQ9Y276 419 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 KDM3AQ9Y4C1 1321 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 LRRD1A4D1F6 860 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 RSPH10B2B2RC85 870 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 LRRN2O75325 713 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 RSPH10BP0C881 870 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 ANXA13P27216 316 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 PAPOLAP51003 745 aaKnown RBP17.73■□□□□ 0.43
TPM1-228ENST00000560975 RAB27AP51159 221 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 CPNE8Q86YQ8 564 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 LRRC47Q8N1G4 583 aaKnown RBP17.73■□□□□ 0.43
TPM1-228ENST00000560975 TAOK3Q9H2K8 898 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 DHX36Q9H2U1 1008 aaKnown RBP17.73■□□□□ 0.43
TPM1-228ENST00000560975 RNPEPL1Q9HAU8 725 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 PCDHA3Q9Y5H8 950 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 CALUO43852 315 aaPredicted RBP17.73■□□□□ 0.43
TPM1-228ENST00000560975 FESP07332 822 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 CCNB1P14635 433 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 GNAZP19086 355 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 CCNG1P51959 295 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 MESDQ14696 234 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 CCDC24Q8N4L8 307 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 CNBD1Q8NA66 436 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 ERP27Q96DN0 273 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 TRAF3IP3Q9Y228 551 aa17.73■□□□□ 0.43
TPM1-228ENST00000560975 AHCYL1O43865 530 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms